Evidence map›Paper›PMID 33472976›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Glycoconjugate pathway connections revealed by sequence similarity network analysis of the monotopic phosphoglycosyl transferases.

Katherine H O'Toole, Barbara Imperiali, Karen N Allen

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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  5. Proteome-wide bioinformatic annotation and functional validation of the monotopic phosphoglycosyl transferase superfamily.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  12. Defining Early Steps inbioRxiv : the preprint server for biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Katherine H O'TooleDepartment of Chemistry, Boston University, Boston, MA 02215.ORCID https://orcid.org/0000-0001-6180-7607
Barbara ImperialiDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139; imper@mit.edu drkallen@bu.edu.ORCID https://orcid.org/0000-0002-5749-7869
Karen N AllenDepartment of Chemistry, Boston University, Boston, MA 02215; imper@mit.edu drkallen@bu.edu.ORCID https://orcid.org/0000-0001-7296-0551
Boston University · USMassachusetts Institute of Technology · US

Funding

Structure and function of the monotopic phosphoglycosyl transferase superfamily: Initiators of biosynthesis of complex bacterial glycoconjugatesR01GM131627 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ALLEN, KAREN N. · 2019 to 2025
$3.1M
NIGMS NIH HHS R01 GM131627
6 · The paper itself

Abstract

The monotopic phosphoglycosyl transferase (monoPGT) superfamily comprises over 38,000 nonredundant sequences represented in bacterial and archaeal domains of life. Members of the superfamily catalyze the first membrane-committed step in en bloc oligosaccharide biosynthetic pathways, transferring a phosphosugar from a soluble nucleoside diphosphosugar to a membrane-resident polyprenol phosphate. The singularity of the monoPGT fold and its employment in the pivotal first membrane-committed step allows confident assignment of both protein and corresponding pathway. The diversity of the family is revealed by the generation and analysis of a sequence similarity network for the superfamily, with fusion of monoPGTs with other pathway members being the most frequent and extensive elaboration. Three common fusions were identified: sugar-modifying enzymes, glycosyl transferases, and regulatory domains. Additionally, unexpected fusions of the monoPGT with members of the polytopic PGT superfamily were discovered, implying a possible evolutionary link through the shared polyprenol phosphate substrate. Notably, a phylogenetic reconstruction of the monoPGT superfamily shows a radial burst of functionalization, with a minority of members comprising only the minimal PGT catalytic domain. The commonality and identity of the fusion partners in the monoPGT superfamily is consistent with advantageous colocalization of pathway members at membrane interfaces.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCytoplasmEvolution, MolecularGene ExpressionGene Regulatory NetworksGlycoconjugatesGlycosyltransferasesGram-Negative BacteriaGram-Positive BacteriaMetabolic Networks and PathwaysModels, MolecularPeriplasmPhylogenyPolysaccharidesBacterial ProteinsGlycoconjugatesGlycosyltransferasesPolysaccharidesenzyme evolutionglycan biosynthetic pathwaymembrane-associated pathwayphylogenetic reconstructionsequence similarity network

Identifiers

PMID33472976
PMCPMC7848588
OpenAlexW3124206312

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.