Evidence map›Paper›PMID 33472068›Full record

ArticleCell reports2021

HDAC inhibition results in widespread alteration of the histone acetylation landscape and BRD4 targeting to gene bodies.

Mariesa J Slaughter, Erin K Shanle, Abid Khan, Katrin F Chua, Tao Hong, Lisa D Boxer, C David Allis, Steven Z Josefowicz, Benjamin A Garcia, Scott B Rothbart and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 110 citations in OpenAlex.

  1. Pooled it
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  9. Article
  10. What makes genes burst.Trends in cell biology · 2026
    Review
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 9 institutions in 1 country.

Mariesa J SlaughterDepartment of Genetics, Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.
Erin K ShanleDepartment of Biological and Environmental Sciences, Longwood University, Farmville, VA 23909, USA.
Abid KhanLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA.
Katrin F ChuaDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA; Geriatric Research, Education, and Clinical Center, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA.
Tao HongDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Lisa D BoxerDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
C David AllisLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065, USA.
Steven Z JosefowiczDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY 10065, USA.
Benjamin A GarciaDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Scott B RothbartCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA.
Brian D StrahlDepartment of Genetics, Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: brian_strahl@med.unc.edu.
Ian J DavisDepartment of Genetics, Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Pediatrics, University of North Carolina, Chapel Hill, NC 27514, USA. Electronic address: ian_davis@med.unc.edu.
Stanford University · USUNC Lineberger Comprehensive Cancer CenterUniversity of North Carolina at Chapel Hill · USGeriatric Research Education and Clinical Center · USLongwood University · USRockefeller University · USUniversity of Pennsylvania · USVan Andel Institute · USWeill Cornell Medicine · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
SEEDING POSTDOCTORAL INNOVATORS IN RESEARCH &EDUCATIONK12GM000678 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DONALD T LYSLE, Kathryn Joanna Reissner · 1999 to 2026
$30.9M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Molecular mechanisms of chromatin and epigenetic regulationR35GM124736 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI ROTHBART, SCOTT · 2017 to 2021
$2.4M
Chromatin maintenance in cancer progressionR01CA198482 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DAVIS, IAN J, RATHMELL, WENDY KIMRYN · 2015 to 2019
$2.3M
Chromatin organization and transcription factor targeting in cancerR01CA166447 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIS, IAN J · 2012 to 2016
$1.6M
NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA166447NCI NIH HHS R01 CA198482NIGMS NIH HHS K12 GM000678NIGMS NIH HHS R35 GM124736NIGMS NIH HHS R35 GM126900
6 · The paper itself

Abstract

Histone acetylation levels are regulated by histone acetyltransferases (HATs) and histone deacetylases (HDACs) that antagonistically control the overall balance of this post-translational modification. HDAC inhibitors (HDACi) are potent agents that disrupt this balance and are used clinically to treat diseases including cancer. Despite their use, little is known about their effects on chromatin regulators, particularly those that signal through lysine acetylation. We apply quantitative genomic and proteomic approaches to demonstrate that HDACi robustly increases a low-abundance histone 4 polyacetylation state, which serves as a preferred binding substrate for several bromodomain-containing proteins, including BRD4. Increased H4 polyacetylation occurs in transcribed genes and correlates with the targeting of BRD4. Collectively, these results suggest that HDAC inhibition functions, at least in part, through expansion of a rare histone acetylation state, which then retargets lysine-acetyl readers associated with changes in gene expression, partially mimicking the effect of bromodomain inhibition.

Indexed as

AcetylationBromodomain Containing ProteinsCell Cycle ProteinsHistone Deacetylase InhibitorsHistonesHumansTranscription FactorsBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsHistone Deacetylase InhibitorsHistonesTranscription FactorsBRD4bromodomainchromatin immunoprecipitationHDAChistone acetylationmass spectrometrypeptide microarraysuperenhancertranscription

Identifiers

PMID33472068
PMCPMC7886050
OpenAlexW3123517680

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.