Evidence map›Paper›PMID 33471325›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Agrobacterium tumefaciens-Mediated Transformation of Rice by Hygromycin Phosphotransferase (hptII) Gene Containing CRISPR/Cas9 Vector.

Shuvobrata Majumder, Karabi Datta, Swapan Kumar Datta

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shuvobrata MajumderLaboratory of Translational Research on Transgenic Crops, University of Calcutta, Kolkata, India.ORCID 0000-0003-1871-5875
Karabi DattaLaboratory of Translational Research on Transgenic Crops, University of Calcutta, Kolkata, India.ORCID 0000-0003-1464-2680
Swapan Kumar DattaLaboratory of Translational Research on Transgenic Crops, University of Calcutta, Kolkata, India. swpndatta@yahoo.com.ORCID 0000-0003-2961-8915
University of Calcutta · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The CRISPR/Cas9 technique for rice genome engineering is gaining momentum and requires a precise gene delivery system. For rice and other crop plants, Agrobacterium tumefaciens-mediated transformation (AMT) is considered a suitable gene transformation method. The AMT for indica-type rice is a challenge because it is less efficient in tissue culture response than japonica-type rice. Here is a protocol of the AMT method that we developed for IR64 variety which has been successfully tested in other popular indica-type rice varieties. We used embryogenic calli as explant and an empty gRNA-containing CRISPR/Cas9 vector with hptII (hygromycin phosphotransferase) gene for the transformation. This technique would speed up rice genome editing via CRISPR/Cas9 technology and facilitate to achieve varied application in the future.

Indexed as

Gene Transfer TechniquesTransformation, GeneticAgrobacterium tumefaciensCRISPR-Cas SystemsGene EditingGenetic VectorsGenome, PlantOryzaPhosphotransferases (Alcohol Group Acceptor)Plants, Genetically ModifiedTransgeneshygromycin-B kinasePhosphotransferases (Alcohol Group Acceptor)Agrobacterium-mediated transformationCRISPR/Cas9Embryogenic calliIndica riceIR64Rice genome editingRice Science

Identifiers

PMID33471325
OpenAlexW3121327478

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.