Evidence map›Paper›PMID 33468677›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Acceleration of catalysis in dihydrofolate reductase by transient, site-specific photothermal excitation.

Rachel Kozlowski, Jing Zhao, R Brian Dyer

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. A Foundational Shift in Models for Enzyme Function.Journal of the American Chemical Society · 2025
    Review
  3. Article
  4. Protein Dynamics and Enzymatic Catalysis.The journal of physical chemistry. B · 2023
    Review
  5. Temporal and spatial resolution of distal protein motions that activate hydrogen tunneling in soybean lipoxygenase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rachel KozlowskiDepartment of Chemistry, Emory University, Atlanta, GA 30322.
Jing ZhaoDepartment of Chemistry, Emory University, Atlanta, GA 30322.ORCID https://orcid.org/0000-0003-1874-6524
R Brian DyerDepartment of Chemistry, Emory University, Atlanta, GA 30322 briandyer@emory.edu.ORCID https://orcid.org/0000-0002-0090-7580

Funding

Proton Transfer Dynamics in Heme-Copper OxidasesP01GM068036 · NIGMS · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI CALLENDER, ROBERT · 2004 to 2018
$26.4M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
EARLY EVENTS IN PROTEIN FOLDINGR01GM053640 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI DYER, RICHARD BRIAN · 1996 to 2022
$6.5M
NCATS NIH HHS UL1 TR000454NIGMS NIH HHS P01 GM068036NIGMS NIH HHS R01 GM053640
6 · The paper itself

Abstract

We have studied the role of protein dynamics in chemical catalysis in the enzyme dihydrofolate reductase (DHFR), using a pump-probe method that employs pulsed-laser photothermal heating of a gold nanoparticle (AuNP) to directly excite a local region of the protein structure and transient absorbance to probe the effect on enzyme activity. Enzyme activity is accelerated by pulsed-laser excitation when the AuNP is attached close to a network of coupled motions in DHFR (on the FG loop, containing residues 116-132, or on a nearby alpha helix). No rate acceleration is observed when the AuNP is attached away from the network (distal mutant and His-tagged mutant) with pulsed excitation, or for any attachment site with continuous wave excitation. We interpret these results within an energy landscape model in which transient, site-specific addition of energy to the enzyme speeds up the search for reactive conformations by activating motions that facilitate this search.

Indexed as

Models, MolecularCatalysisCatalytic DomainGoldHot TemperatureKineticsMetal NanoparticlesProtein ConformationTetrahydrofolate DehydrogenaseGoldTetrahydrofolate Dehydrogenasedynamicsenzymenanoparticlesphotothermal

Identifiers

PMID33468677
PMCPMC7848751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.