Evidence map›Paper›PMID 33468668›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Positive epistasis between disease-causing missense mutations and silent polymorphism with effect on mRNA translation velocity.

Robert Rauscher, Giovana B Bampi, Marta Guevara-Ferrer, Leonardo A Santos, Disha Joshi, David Mark, Lisa J Strug, Johanna M Rommens, Manfred Ballmann, Eric J Sorscher and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  11. Ribosomal frameshifting selectively modulates the assembly, function, and pharmacological rescue of a misfolded CFTR variant.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Review
  14. Racial inequities and rareJournal of clinical & translational endocrinology · 2024
    Article
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  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Robert RauscherBiochemistry and Molecular Biology, Department of Chemistry, University of Hamburg, 20146 Hamburg, Germany.ORCID https://orcid.org/0000-0003-2571-757X
Giovana B BampiBiochemistry and Molecular Biology, Department of Chemistry, University of Hamburg, 20146 Hamburg, Germany.
Marta Guevara-FerrerBiochemistry and Molecular Biology, Department of Chemistry, University of Hamburg, 20146 Hamburg, Germany.ORCID https://orcid.org/0000-0002-5334-3344
Leonardo A SantosBiochemistry and Molecular Biology, Department of Chemistry, University of Hamburg, 20146 Hamburg, Germany.ORCID https://orcid.org/0000-0001-5650-8098
Disha JoshiDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322.
David MarkBiochemistry and Molecular Biology, Department of Chemistry, University of Hamburg, 20146 Hamburg, Germany.ORCID https://orcid.org/0000-0002-1688-5224
Lisa J StrugProgram in Genetics & Genome Biology, The Hospital for Sick Children, Toronto M5G 0A4, Canada.ORCID https://orcid.org/0000-0003-0503-9740
Johanna M RommensProgram in Genetics & Genome Biology, The Hospital for Sick Children, Toronto M5G 0A4, Canada.ORCID https://orcid.org/0000-0001-8732-825X
Manfred BallmannPediatric Clinic, Universitätsmedizin, 18057 Rostock, Germany.ORCID https://orcid.org/0000-0003-4480-1312
Eric J SorscherDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322.ORCID https://orcid.org/0000-0001-9341-3354
Kathryn E OliverDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322.ORCID https://orcid.org/0000-0002-7781-7006
Zoya IgnatovaBiochemistry and Molecular Biology, Department of Chemistry, University of Hamburg, 20146 Hamburg, Germany; zoya.ignatova@uni-hamburg.de.ORCID https://orcid.org/0000-0002-9478-8825

Funding

Ribosomal perturbation as a mechanism to prevent misfolding of CFTRR01HL136414 · NHLBI · EMORY UNIVERSITY · PI HARTMAN, JOHN L, SORSCHER, ERIC J · 2018 to 2025
$4.5M
Modulation of ribosome velocity as a means to rescue refractory CF-causing variantsR00HL151965 · NHLBI · EMORY UNIVERSITY · PI OLIVER, KATHRYN E · 2021 to 2023
$747k
Modulation of ribosome velocity as a means to rescue refractory CF-causing variantsK99HL151965 · NHLBI · EMORY UNIVERSITY · PI OLIVER, KATHRYN E · 2020 to 2021
$211k
NHLBI NIH HHS K99 HL151965NHLBI NIH HHS R00 HL151965NHLBI NIH HHS R01 HL136414
6 · The paper itself

Abstract

Epistasis refers to the dependence of a mutation on other mutation(s) and the genetic context in general. In the context of human disorders, epistasis complicates the spectrum of disease symptoms and has been proposed as a major contributor to variations in disease outcome. The nonadditive relationship between mutations and the lack of complete understanding of the underlying physiological effects limit our ability to predict phenotypic outcome. Here, we report positive epistasis between intragenic mutations in the cystic fibrosis transmembrane conductance regulator (CFTR)-the gene responsible for cystic fibrosis (CF) pathology. We identified a synonymous single-nucleotide polymorphism (sSNP) that is invariant for the CFTR amino acid sequence but inverts translation speed at the affected codon. This sSNP in

Indexed as

Epistasis, GeneticProtein BiosynthesisAmino Acid SequenceCodonCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorHumansMutation, MissensePolymorphism, Single NucleotideRNA, MessengerCFTR protein, humanCodonCystic Fibrosis Transmembrane Conductance RegulatorRNA, MessengerCFTRcotranslational foldingmutationssynonymous SNPtranslation

Identifiers

PMID33468668
PMCPMC7848603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.