Evidence map›Paper›PMID 33465157›Full record

ArticlePLoS pathogens2021

Relationship between CD4 T cell turnover, cellular differentiation and HIV persistence during ART.

Charline Bacchus-Souffan, Mark Fitch, Jori Symons, Mohamed Abdel-Mohsen, Daniel B Reeves, Rebecca Hoh, Mars Stone, Joseph Hiatt, Peggy Kim, Abha Chopra and 14 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 50 citations in OpenAlex.

  1. Interleukin 6 Blockade With Tocilizumab Diminishes Indices of Inflammation That Are Linked to Mortality in Treated Human Immunodeficiency Virus Infection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Trial
  2. The immunophenotype and proviral landscape of HIV-infected CD4 T cells during antiretroviral therapy.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 10 institutions in 2 countries.

Charline Bacchus-SouffanDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.
Mark FitchDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, California, United States of America.ORCID 0000-0001-9058-4529
Jori SymonsThe Peter Doherty Institute for Infection and Immunity, University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.ORCID 0000-0003-0252-3887
Mohamed Abdel-MohsenThe Wistar Institute, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-9945-4314
Daniel B ReevesVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0001-5684-9538
Rebecca HohDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.ORCID 0000-0001-5112-4220
Mars StoneVitalant Research Institute and Department of Laboratory Medicine at the University of California, San Francisco, California, United States of America.ORCID 0000-0001-5619-2767
Joseph HiattMedical Scientist Training Program & Biomedical Sciences Graduate Program, University of California, San Francisco, California, United States of America.ORCID 0000-0002-8015-9614
Peggy KimInfectious Diseases Section, Medical Service, San Francisco Veterans Affairs Medical Center, California, United States of America.
Abha ChopraInstitute for Immunology and Infectious Diseases, Murdoch University, Perth, Australia.
Haelee AhnDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.
Vanessa A YorkDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.ORCID 0000-0002-0583-1060
Daniel L CameronDivision of Bioinformatics, Walter & Eliza Hall Institute of Medical Research, Parkville, Australia.ORCID 0000-0002-0951-7116
Frederick M HechtDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.ORCID 0000-0002-5782-1171
Jeffrey N MartinDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.ORCID 0000-0002-9773-3256
Steven A YuklDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.
Simon MallalInstitute for Immunology and Infectious Diseases, Murdoch University, Perth, Australia.ORCID 0000-0002-7036-1309
Paul U CameronThe Peter Doherty Institute for Infection and Immunity, University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.ORCID 0000-0002-1906-6945
Steven G DeeksDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, California, United States of America.ORCID 0000-0001-6371-747X
Joshua T SchifferVaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0002-2598-1621
Sharon R LewinThe Peter Doherty Institute for Infection and Immunity, University of Melbourne and Royal Melbourne Hospital, Melbourne, Australia.ORCID 0000-0002-0330-8241
Marc K HellersteinDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, California, United States of America.ORCID 0000-0002-2327-0834
Joseph M McCuneGlobal Health Innovative Technology Solutions/HIV Frontiers, Bill & Melinda Gates Foundation, Seattle, Washington, United States of America.ORCID 0000-0002-9388-070X
Peter W HuntDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, California, United States of America.ORCID 0000-0002-4571-4870
University of California, San Francisco · USSan Francisco General Hospital · USThe Royal Melbourne Hospital · AUFred Hutch Cancer Center · USMurdoch University · AUUniversity of California, Berkeley · USGates Foundation · USSan Francisco VA Medical Center · USThe Wistar Institute · USWalter and Eliza Hall Institute of Medical Research · AU

Funding

University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
Delaney AIDS Research Enterprise to Cure HIVUM1AI126611 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT, PICKER, LOUIS J. · 2016 to 2020
$27.9M
Novel single genome approaches to determine the mechanisms of HIV latent infection in blood, gut, and lymph nodesR01DK120387 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LICHTERFELD, MATHIAS, YUKL, STEVEN A · 2019 to 2023
$4.1M
Timing of ART and homeostasis of the persistent HIV reservoir in the adultR01AI116368 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUNT, PETER W · 2015 to 2019
$3.7M
Investigating Mechanisms of HIV Persistence in the GutR01DK108349 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI YUKL, STEVEN A · 2015 to 2019
$2.2M
Understanding HIV latency reversal and clearance of infected cells in vivoR01AI132128 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K, YUKL, STEVEN A · 2017 to 2021
$1.9M
Persistent Functional Immune Defects in Treated HIV InfectionK24AI145806 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUNT, PETER W · 2020 to 2024
$921k
Simulating persistence and elimination of the HIV reservoirK25AI155224 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI REEVES, DANIEL · 2020 to 2024
$581k
NIAID NIH HHS K24 AI145806NIAID NIH HHS K25 AI155224NIAID NIH HHS P30 AI027757NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI116368NIAID NIH HHS R01 AI132128NIAID NIH HHS UM1 AI126611NIDDK NIH HHS R01 DK108349NIDDK NIH HHS R01 DK120387NIGMS NIH HHS T32 GM007618
6 · The paper itself

Abstract

The precise role of CD4 T cell turnover in maintaining HIV persistence during antiretroviral therapy (ART) has not yet been well characterized. In resting CD4 T cell subpopulations from 24 HIV-infected ART-suppressed and 6 HIV-uninfected individuals, we directly measured cellular turnover by heavy water labeling, HIV reservoir size by integrated HIV-DNA (intDNA) and cell-associated HIV-RNA (caRNA), and HIV reservoir clonality by proviral integration site sequencing. Compared to HIV-negatives, ART-suppressed individuals had similar fractional replacement rates in all subpopulations, but lower absolute proliferation rates of all subpopulations other than effector memory (TEM) cells, and lower plasma IL-7 levels (p = 0.0004). Median CD4 T cell half-lives decreased with cell differentiation from naïve to TEM cells (3 years to 3 months, p<0.001). TEM had the fastest replacement rates, were most highly enriched for intDNA and caRNA, and contained the most clonal proviral expansion. Clonal proviruses detected in less mature subpopulations were more expanded in TEM, suggesting that they were maintained through cell differentiation. Earlier ART initiation was associated with lower levels of intDNA, caRNA and fractional replacement rates. In conclusion, circulating integrated HIV proviruses appear to be maintained both by slow turnover of immature CD4 subpopulations, and by clonal expansion as well as cell differentiation into effector cells with faster replacement rates.

Indexed as

Cell DifferentiationViral LoadVirus ReplicationAdultAnti-Retroviral AgentsCase-Control StudiesCD4-Positive T-LymphocytesDNA, ViralHIV-1HIV InfectionsHumansMaleMiddle AgedAnti-Retroviral AgentsDNA, Viral

Identifiers

PMID33465157
PMCPMC7846027
OpenAlexW3123558466

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.