Evidence map›Paper›PMID 33462887›Full record

ArticleAngewandte Chemie (International ed. in English)2020

Correlating Glycoforms of DC-SIGN with Stability Using a Combination of Enzymatic Digestion and Ion Mobility Mass Spectrometry.

Hsin-Yung Yen, Idlir Liko, Joseph Gault, Di Wu, Weston B Struwe, Carol V Robinson

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Distinct core glycan andChemical science · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hsin-Yung YenPhysical and Theoretical Chemistry, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3TA, UK.
Idlir LikoPhysical and Theoretical Chemistry, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3TA, UK.
Joseph GaultPhysical and Theoretical Chemistry, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3TA, UK.
Di WuPhysical and Theoretical Chemistry, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3TA, UK.
Weston B StruwePhysical and Theoretical Chemistry, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3TA, UK.
Carol V RobinsonPhysical and Theoretical Chemistry, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3TA, UK.ORCID 0000-0001-7829-5505

Funding

European Research Council 641317Medical Research Council MR/N020413/1Wellcome TrustWellcome Trust 104633/Z/14/Z
6 · The paper itself

Abstract

The immune scavenger protein DC-SIGN interacts with glycosylated proteins and has a putative role in facilitating viral infection. How these recognition events take place with different viruses is not clear and the effects of glycosylation on the folding and stability of DC-SIGN have not been reported. Herein, we report the development and application of a mass-spectrometry-based approach to both uncover and characterise the effects of O-glycans on the stability of DC-SIGN. We first quantify the Core 1 and 2 O-glycan structures on the carbohydrate recognition and extracellular domains of the protein using sequential exoglycosidase sequencing. Using ion mobility mass spectrometry, we show how specific O-glycans, and/or single monosaccharide substitutions, alter both the overall collision cross section and the gas-phase stability of the DC-SIGN isoforms. We find that rather than the mass or length of glycoprotein modifications, the stability of DC-SIGN is better correlated with the number of glycosylation sites.

Indexed as

Cell Adhesion MoleculesDC-Specific ICAM-3 Grabbing NonintegrinGlycosylationHEK293 CellsHumansIon Mobility SpectrometryLectins, C-TypeMass SpectrometryPolysaccharidesProtein IsoformsProtein StabilityReceptors, Cell SurfaceCell Adhesion MoleculesDC-Specific ICAM-3 Grabbing NonintegrinLectins, C-TypePolysaccharidesProtein IsoformsReceptors, Cell SurfaceDC-SIGNglycoproteinintact mass spectrometryion mobilityO-glycosylation

Identifiers

PMID33462887
PMCPMC7496578

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.