Evidence map›Paper›PMID 33462673›Full record

ArticleArchives of virology2021

Norovirus strains in patients with acute gastroenteritis in rural and low-income urban areas in northern Brazil.

Rory J Tinker, Antonio Charlys da Costa, Roozbeh Tahmasebi, Flavio Augusto de Pádua Milagres, Vanessa Dos Santos Morais, Ramendra Pati Pandey, Alexis José-Abrego, Rafael Brustulin, Maria da Aparecida Rodrigues Teles, Mariana Sequetin Cunha and 7 more

Abstract read
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In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Human norovirus in Brazil: an update of reports in different settings.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Review
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Rory J Tinker *Instituto de Medicina Tropical, Universidade de São Paulo, Sao Paulo, Brasil.
Antonio Charlys da Costa *Instituto de Medicina Tropical, Universidade de São Paulo, Sao Paulo, Brasil. charlysbr@yahoo.com.br.
Roozbeh Tahmasebi *Instituto de Medicina Tropical, Universidade de São Paulo, Sao Paulo, Brasil.
Flavio Augusto de Pádua MilagresFederal University of Tocantins, Tocantins, Brazil.
Vanessa Dos Santos MoraisInstituto de Medicina Tropical, Universidade de São Paulo, Sao Paulo, Brasil.
Ramendra Pati PandeyCentre for Drug Design Discovery and Development, SRM University Delhi NCR, Sonepat, India.
Alexis José-AbregoDepartment of Molecular Biology in Medicine, Civil Hospital of Guadalajara, "Fray Antonio Alcalde", Guadalajara, Mexico.
Rafael BrustulinFederal University of Tocantins, Tocantins, Brazil.
Maria da Aparecida Rodrigues TelesPublic Health Laboratory of Tocantins State (LACEN/TO), Tocantins, Brazil.
Mariana Sequetin CunhaVectorborne Disease Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Emerson Luiz Lima AraújoGeneral Coordination of Public Health Laboratories of the Strategic Articulation Department of the Health Surveillance Secretariat of the Ministry of Health (CGLAB/DAEVS/SVS-MS), Brasília, Brazil.
Mariela Martínez GómezMolecular and Genetic Biology Division, Department of Molecular Biology, Clemente Estable Biological Research Institute, Montevideo, Uruguay.
Xutao DengVitalant Research Institute, San Francisco, USA.
Eric Delwart *Vitalant Research Institute, San Francisco, USA.
Ester Cerdeira Sabino *Instituto de Medicina Tropical, Universidade de São Paulo, Sao Paulo, Brasil.
Elcio Leal *Institute of Biological Sciences, Federal University of Pará, Pará, Brazil.
Adriana Luchs *Enteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Av. Dr Arnaldo, nº 355, São Paulo, SP, 01246-902, Brazil. driluchs@gmail.com.ORCID http://orcid.org/0000-0003-4131-990X

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico (BR) 302677/2019-4Conselho Nacional de Desenvolvimento Científico e Tecnológico (BR) 400354/2016-0Fundação de Amparo à Pesquisa do Estado de São Paulo (BR) 2015/12944-9Fundação de Amparo à Pesquisa do Estado de São Paulo (BR) 2016/01735-2Fundação de Amparo à Pesquisa do Estado de São Paulo (BR) 2017/00021-9Fundação de Amparo à Pesquisa do Estado de São Paulo (BR) 2019/21706-5
6 · The paper itself

Abstract

From 2010-2016, a total of 251 stool samples were screened for norovirus using next-generation sequencing (NGS) followed by phylogenetic analysis to investigate the genotypic diversity of noroviruses in rural and low-income urban areas in northern Brazil. Norovirus infection was detected in 19.9% (50/251) of the samples. Eight different genotypes were identified: GII.4_Sydney[P31] (64%, 32/50), GII.6[P7] (14%, 7/50), GII.17[P17] (6%, 3/50), GII.1[P33] (6%, 3/50), GII.3[P16] (4%, 2/50), GII.2[P16] (2%, 1/50), GII.2[P2] (2%, 1/50), and GII.4_New Orleans[P4] (2%, 1/50). Distinct GII.6[P7] variants were recognized, indicating the presence of different co-circulating strains. Elucidating norovirus genetic diversity will improve our understanding of their potential health burden, in particular for the GII.4_Sydney[P31] variant.

Indexed as

Base SequenceBrazilCaliciviridae InfectionsCross-Sectional StudiesFecesGastroenteritisGenetic VariationGenotypeHigh-Throughput Nucleotide SequencingHumansMolecular EpidemiologyNorovirusPhylogenyPovertyRNA, ViralRNA, Viral

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.