Evidence map›Paper›PMID 33462497›Full record

ArticleNature chemical biology2021

Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.

Hayley L Knox, Percival Yang-Ting Chen, Anthony J Blaszczyk, Arnab Mukherjee, Tyler L Grove, Erica L Schwalm, Bo Wang, Catherine L Drennan, Squire J Booker

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Mechanistic insight into radicalNatural product reports · 2026
    Review
  4. Article
  5. Article
  6. Structural and Spectroscopic Basis for Catalysis by a Class C RadicalJournal of the American Chemical Society · 2026
    Article
  7. Review
  8. Review
  9. Structural basis for iterative methylation by a cobalamin-dependent radicalProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Structural and Spectroscopic Basis for Catalysis by a Class C RadicalbioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Structural Evidence for DUF512 as a RadicalACS bio & med chem Au · 2024
    Article
  15. S-adenosyl-L-methionine is the unexpected methyl donor for the methylation of mercury by the membrane-associated HgcAB complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Hayley L KnoxDepartment of Chemistry, Pennsylvania State University, University Park, PA, USA.
Percival Yang-Ting ChenDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-7362-9801
Anthony J BlaszczykDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.
Arnab MukherjeeDepartment of Chemistry, Pennsylvania State University, University Park, PA, USA.
Tyler L GroveDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.
Erica L SchwalmDepartment of Chemistry, Pennsylvania State University, University Park, PA, USA.
Bo WangDepartment of Chemistry, Pennsylvania State University, University Park, PA, USA.
Catherine L DrennanDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA. cdrennan@mit.edu.
Squire J BookerDepartment of Chemistry, Pennsylvania State University, University Park, PA, USA. squire@psu.edu.ORCID http://orcid.org/0000-0002-7211-5937
Pennsylvania State University · USAlbert Einstein College of Medicine · USHoward Hughes Medical Institute · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USScripps Institution of Oceanography · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Radical Mechanisms of Iron-Sulfur ProteinsR35GM122595 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SQUIRE J. BOOKER · 2017 to 2026
$3.4M
Metalloenzyme structure, function and assemblyR35GM126982 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CATHERINE L DRENNAN · 2018 to 2026
$3.4M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Howard Hughes Medical InstituteNIGMS NIH HHS P30 GM124169NIGMS NIH HHS R35 GM122595NIGMS NIH HHS R35 GM126982NIH HHS S10 OD012289
6 · The paper itself

Abstract

Tryptophan 2C methyltransferase (TsrM) methylates C2 of the indole ring of L-tryptophan during biosynthesis of the quinaldic acid moiety of thiostrepton. TsrM is annotated as a cobalamin-dependent radical S-adenosylmethionine (SAM) methylase; however, TsrM does not reductively cleave SAM to the universal 5'-deoxyadenosyl 5'-radical intermediate, a hallmark of radical SAM (RS) enzymes. Herein, we report structures of TsrM from Kitasatospora setae, which are the first structures of a cobalamin-dependent radical SAM methylase. Unexpectedly, the structures show an essential arginine residue that resides in the proximal coordination sphere of the cobalamin cofactor, and a [4Fe-4S] cluster that is ligated by a glutamyl residue and three cysteines in a canonical CXXXCXXC RS motif. Structures in the presence of substrates suggest a substrate-assisted mechanism of catalysis, wherein the carboxylate group of SAM serves as a general base to deprotonate N1 of the tryptophan substrate, facilitating the formation of a C2 carbanion.

Indexed as

ArginineCatalysisCoenzymesIron-Sulfur ProteinsMethylationMethyltransferasesS-AdenosylmethionineStreptomycetaceaeThiostreptonTryptophanVitamin B 12X-Ray DiffractionArginineCoenzymesIron-Sulfur ProteinsMethyltransferasesS-AdenosylmethionineThiostreptonTryptophantryptophan C-methyltransferaseVitamin B 12

Identifiers

PMID33462497
PMCPMC7990684
OpenAlexW3124103939

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.