Evidence map›Paper›PMID 33462351›Full record

ArticleScientific reports2021

Artificial neural network, predictor variables and sensitivity threshold for DNA methylation-based age prediction using blood samples.

Zhonghui Thong, Jolena Ying Ying Tan, Eileen Shuzhen Loo, Yu Wei Phua, Xavier Liang Shun Chan, Christopher Kiu-Choong Syn

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Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Zhonghui ThongDNA Profiling Laboratory, Biology Division, Health Sciences Authority, 11 Outram Road, Singapore, 169078, Singapore. thong_zhonghui@hsa.gov.sg.
Jolena Ying Ying TanDNA Profiling Laboratory, Biology Division, Health Sciences Authority, 11 Outram Road, Singapore, 169078, Singapore.
Eileen Shuzhen LooDNA Profiling Laboratory, Biology Division, Health Sciences Authority, 11 Outram Road, Singapore, 169078, Singapore.
Yu Wei PhuaDNA Profiling Laboratory, Biology Division, Health Sciences Authority, 11 Outram Road, Singapore, 169078, Singapore.
Xavier Liang Shun ChanDNA Profiling Laboratory, Biology Division, Health Sciences Authority, 11 Outram Road, Singapore, 169078, Singapore.
Christopher Kiu-Choong SynDNA Profiling Laboratory, Biology Division, Health Sciences Authority, 11 Outram Road, Singapore, 169078, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regression models are often used to predict age of an individual based on methylation patterns. Artificial neural network (ANN) however was recently shown to be more accurate for age prediction. Additionally, the impact of ethnicity and sex on our previous regression model have not been studied. Furthermore, there is currently no age prediction study investigating the lower limit of input DNA at the bisulfite treatment stage prior to pyrosequencing. Herein, we evaluated both regression and ANN models, and the impact of ethnicity and sex on age prediction for 333 local blood samples using three loci on the pyrosequencing platform. Subsequently, we trained a one locus-based ANN model to reduce the amount of DNA used. We demonstrated that the ANN model has a higher accuracy of age prediction than the regression model. Additionally, we showed that ethnicity did not affect age prediction among local Chinese, Malays and Indians. Although the predicted age of males were marginally overestimated, sex did not impact the accuracy of age prediction. Lastly, we present a one locus, dual CpG model using 25 ng of input DNA that is sufficient for forensic age prediction. In conclusion, the two ANN models validated would be useful for age prediction to provide forensic intelligence leads.

Indexed as

CpG IslandsDNA MethylationAdultAgingAnthropometryDNAEthnicityFemaleForensic GeneticsHumansMaleMiddle AgedNeural Networks, ComputerSequence Analysis, DNAYoung AdultDNA

Identifiers

PMID33462351
PMCPMC7814006

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.