Evidence map›Paper›PMID 33461977›Full record

ArticleJournal of medical genetics2022

Clinical exome sequencing data reveal high diagnostic yields for congenital diaphragmatic hernia plus (CDH+) and new phenotypic expansions involving CDH.

Tiana M Scott, Ian M Campbell, Andres Hernandez-Garcia, Seema R Lalani, Pengfei Liu, Chad A Shaw, Jill A Rosenfeld, Daryl A Scott

Open access · greenAbstract read
In one paragraph

Article in Journal of medical genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

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  13. Journal of pediatric genetics · 2024
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  15. Rare variants found in clinical gene panels illuminate the genetic and allelic architecture of orofacial clefting.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Tiana M ScottDepartment of Microbiology and Molecular Biology, Brigham Young University, Provo, Utah, USA.
Ian M CampbellDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Andres Hernandez-GarciaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Seema R LalaniTexas Children's Hospital, Houston, Texas, USA.ORCID 0000-0003-0707-657X
Pengfei LiuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-4177-709X
Chad A ShawDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0001-5664-7987
Daryl A ScottTexas Children's Hospital, Houston, Texas, USA dscott@bcm.edu.ORCID 0000-0003-1460-5169
Baylor College of Medicine · USBrigham Young University · USChildren's Hospital of Philadelphia · US

Funding

Mechanisms of Abnormal Diaphragm and Cardiac DevelopmentR01HD098458 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI Daryl Armstrong Scott · 2020 to 2026
$2.8M
NICHD NIH HHS R01 HD098458
6 · The paper itself

Abstract

backgroundCongenital diaphragmatic hernia (CDH) is a life-threatening birth defect that often co-occurs with non-hernia-related anomalies (CDH+). While copy number variant (CNV) analysis is often employed as a diagnostic test for CDH+, clinical exome sequencing (ES) has not been universally adopted.

methodsWe analysed a clinical database of ~12 000 test results to determine the diagnostic yields of ES in CDH+ and to identify new phenotypic expansions.

resultsAmong the 76 cases with an indication of CDH+, a molecular diagnosis was made in 28 cases for a diagnostic yield of 37% (28/76). A provisional diagnosis was made in seven other cases (9%; 7/76). Four individuals had a diagnosis of Kabuki syndrome caused by frameshift variants in

conclusionWe conclude that ES should be ordered in cases of CDH+ when a specific diagnosis is not suspected and CNV analyses are negative. Our results also provide evidence in favour of phenotypic expansions involving CDH for genes associated with

Indexed as

Hernias, Diaphragmatic, CongenitalAnimalsDNA Copy Number VariationsDNA HelicasesExomeExome SequencingForkhead Transcription FactorsFrameshift MutationHumansMiceNuclear ProteinsRepressor ProteinsTranscription FactorsDNA HelicasesForkhead Transcription FactorsFOXP1 protein, humanNuclear ProteinsRepressor ProteinsSMARCA4 protein, humanTranscription Factorsand neonatal diseases and abnormalitiescongenitalgeneticsgenetic testinghereditaryhuman geneticsmedicalrespiratory tract diseases

Identifiers

PMID33461977
PMCPMC8286264
OpenAlexW3123627099

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.