Evidence map›Paper›PMID 33454861›Full record

ArticleArchives of virology2021

Molecular profile of African swine fever virus (ASFV) circulating in Vietnam during 2019-2020 outbreaks.

Nguyen Tuan Anh Mai, Xuan Dang Vu, Thi Thu Huyen Nguyen, Van Tam Nguyen, Thi Bich Ngoc Trinh, Yong Joo Kim, Hyun-Joo Kim, Ki-Hyun Cho, Thi Lan Nguyen, Thi To Nga Bui and 6 more

Abstract read
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In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 49 citations in OpenAlex.

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  16. Identification ofFrontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Nguyen Tuan Anh Mai *College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Xuan Dang Vu *College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Thi Thu Huyen Nguyen *College of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Van Tam NguyenCollege of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Thi Bich Ngoc TrinhCollege of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Yong Joo KimForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon, South Korea.
Hyun-Joo KimForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon, South Korea.
Ki-Hyun ChoForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon, South Korea.
Thi Lan NguyenCollege of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Thi To Nga BuiCollege of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam.
Dae Gwin JeongKorea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea.
Sun-Woo YoonKorea Research Institute of Bioscience and Biotechnology, Daejeon, South Korea.
Thang TruongNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB, Canada.
Aruna AmbagalaNational Centre for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB, Canada.
Daesub SongCollege of Pharmacy, Korea University, Sejong, South Korea.
Van Phan LeCollege of Veterinary Medicine, Vietnam National University of Agriculture, Hanoi, Vietnam. letranphan@vnua.edu.vn.ORCID http://orcid.org/0000-0003-0583-4111
Vietnam National University of Agriculture · VNAnimal and Plant Quarantine Agency · KRCanadian Food Inspection Agency · CAKorea Research Institute of Bioscience and Biotechnology · KRKorea University · KR

Funding

Vietnam National Project DTDL.CN-53/19
6 · The paper itself

Abstract

African swine fever (ASF) is a highly infectious disease of pigs caused by African swine fever virus (ASFV). In order to identify potential genetic variations among ASFV strains circulating in Vietnam, 26 ASFV isolates from organs and blood samples collected from domestic pigs from 23 different provinces of northern, central and southern Vietnam during 2019-2020 ASF outbreaks were genetically characterized. Nucleotide sequences were determined for a portion of the B646L (p72) gene, the complete E183L (p54) gene, the variable region of EP402R (CD2v), the central variable region (CVR) of pB602L, and a tandem repeat sequence (TRS) between the I73R and I329L genes. Analysis of the partial B646L (p72) and EP402R (CD2v) gene sequences and the full-length E183L (p54) gene sequence showed that all 26 ASFV isolates belonged to genotype II and serotype VIII and that they were identical to the strain Georgia/2007/1 and all ASFV strains sequenced in China. The TRS between the I73R and I329L genes contained a 10-nucleotide insertion that was observed in the Chinese ASFV strain CN201801 isolated from domestic pigs in 2018, but not in the Georgia/2007/1 and China/Jilin/2018/boar strains isolated from wild boar in China. This is the first intra-epidemic genome analysis reported for the ASFV strains circulating in Vietnam.

Indexed as

African Swine FeverAfrican Swine Fever VirusAmino Acid SequenceAnimalsDNA, ViralGenetic VariationGenome, ViralMutagenesis, InsertionalSequence Analysis, DNASus scrofaSwineTandem Repeat SequencesVietnamDNA, Viral

Identifiers

PMID33454861
OpenAlexW3123322835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.