Evidence map›Paper›PMID 33453993›Full record

ArticleThe Journal of biological chemistry2020

Novel fluorescent GPCR biosensor detects retinal equilibrium binding to opsin and active G protein and arrestin signaling conformations.

Christopher T Schafer, Anthony Shumate, David L Farrens

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. A rapid, tag-free way to purify functional GPCRs.The Journal of biological chemistry · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Christopher T SchaferDepartment of Chemical Physiology and Biochemistry, Oregon Health and Science University, Portland, Oregon, USA.
Anthony ShumateDepartment of Chemical Physiology and Biochemistry, Oregon Health and Science University, Portland, Oregon, USA.
David L FarrensDepartment of Chemical Physiology and Biochemistry, Oregon Health and Science University, Portland, Oregon, USA. Electronic address: farrensd@ohsu.edu.
Oregon Health & Science University · US

Funding

BIOLOGICAL BASES OF DRUG-SEEKING BEHAVIORT32DA007262 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI WILLIAMS, JOHN T · 1991 to 2022
$9.4M
Program in Molecular and Cellular BiosciencesT32GM071338 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MASLEN, CHERYL L · 2005 to 2020
$3.5M
Structural Dynamics in Rhodopsin Activation and AttenuationR01EY029343 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI David L Farrens · 2019 to 2026
$2.9M
Structural Dynamics of Retinal Binding and ReleaseR01EY015436 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI FARRENS, DAVID L · 2006 to 2014
$2.6M
Translational Vision Science Research at Oregon Health & Science UniversityT32EY023211 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Yali Jia, Kate E Keller · 2013 to 2026
$2.4M
Opioid Sensitive GABA inputs to the Ventral MidbrainR01DA034388 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI WILLIAMS, JOHN T · 2012 to 2016
$967k
Crystallization and Structural Analysis of the Human Cannabinoid Receptor CB1R21DA043001 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI FARRENS, DAVID L · 2017 to 2018
$424k
Identifying Dynamic Equilibrium Binding of Retinal and Non-retinal Ligands to RhodopsinR21EY027959 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI FARRENS, DAVID L · 2017 to 2018
$424k
An investigation of the mechanisms governing allosterism and G-protein selectivity of the human cannabinoid receptor, CB1.    F31DA049438 · NIDA · OREGON HEALTH & SCIENCE UNIVERSITY · PI SHUMATE, ANTHONY D · 2019 to 2021
$137k
NEI NIH HHS R01 EY015436NEI NIH HHS R01 EY029343NEI NIH HHS R21 EY027959NEI NIH HHS T32 EY023211NIDA NIH HHS F31 DA049438NIDA NIH HHS R01 DA034388NIDA NIH HHS R21 DA043001NIDA NIH HHS T32 DA007262NIGMS NIH HHS T32 GM071338
6 · The paper itself

Abstract

Rhodopsin is a canonical class A photosensitive G protein-coupled receptor (GPCR), yet relatively few pharmaceutical agents targeting this visual receptor have been identified, in part due to the unique characteristics of its light-sensitive, covalently bound retinal ligands. Rhodopsin becomes activated when light isomerizes 11-cis-retinal into an agonist, all-trans-retinal (ATR), which enables the receptor to activate its G protein. We have previously demonstrated that, despite being covalently bound, ATR can display properties of equilibrium binding, yet how this is accomplished is unknown. Here, we describe a new approach for both identifying compounds that can activate and attenuate rhodopsin and testing the hypothesis that opsin binds retinal in equilibrium. Our method uses opsin-based fluorescent sensors, which directly report the formation of active receptor conformations by detecting the binding of G protein or arrestin fragments that have been fused onto the receptor's C terminus. We show that these biosensors can be used to monitor equilibrium binding of the agonist, ATR, as well as the noncovalent binding of β-ionone, an antagonist for G protein activation. Finally, we use these novel biosensors to observe ATR release from an activated, unlabeled receptor and its subsequent transfer to the sensor in real time. Taken together, these data support the retinal equilibrium binding hypothesis. The approach we describe should prove directly translatable to other GPCRs, providing a new tool for ligand discovery and mutant characterization.

Indexed as

Amino Acid SequenceAnimalsArrestinFluorescenceFluorescent DyesGTP-Binding ProteinsLightProtein BindingProtein ConformationReceptors, G-Protein-CoupledRhodopsinSignal TransductionArrestinFluorescent DyesGTP-Binding ProteinsReceptors, G-Protein-CoupledRhodopsinarrestinbiosensorconformational changedrug discoveryfluorescenceG proteinG protein-coupled receptor (GPCR)protein engineeringrhodopsin

Identifiers

PMID33453993
PMCPMC7762930
OpenAlexW3091890131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.