Evidence map›Paper›PMID 33452274›Full record

ArticleScientific reports2021

Phosphorylation-induced changes in the PDZ domain of Dishevelled 3.

Miroslav Jurásek, Jitender Kumar, Petra Paclíková, Alka Kumari, Konstantinos Tripsianes, Vítězslav Bryja, Robert Vácha

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Miroslav JurásekNational Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, 625 00, Brno, Czech Republic.
Jitender KumarCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00, Brno, Czech Republic.
Petra PaclíkováDepartment of Experimental Biology, Faculty of Science, Masaryk University, Brno, 62500, Czech Republic.
Alka KumariDepartment of Experimental Biology, Faculty of Science, Masaryk University, Brno, 62500, Czech Republic.
Konstantinos TripsianesCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00, Brno, Czech Republic.
Vítězslav BryjaDepartment of Experimental Biology, Faculty of Science, Masaryk University, Brno, 62500, Czech Republic.
Robert VáchaNational Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 753/5, 625 00, Brno, Czech Republic. robert.vacha@mail.muni.cz.
Central European Institute of Technology – Masaryk University · CZMasaryk University · CZCzech Academy of Sciences, Institute of Biophysics · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The PDZ domain of Dishevelled 3 protein belongs to a highly abundant protein recognition motif which typically binds short C-terminal peptides. The affinity of the PDZ towards the peptides could be fine-tuned by a variety of post-translation modifications including phosphorylation. However, how phosphorylations affect the PDZ structure and its interactions with ligands remains elusive. Combining molecular dynamics simulations, NMR titration, and biological experiments, we explored the role of previously reported phosphorylation sites and their mimetics in the Dishevelled PDZ domain. Our observations suggest three major roles for phosphorylations: (1) acting as an on/off PDZ binding switch, (2) allosterically affecting the binding groove, and (3) influencing the secondary binding site. Our simulations indicated that mimetics had similar but weaker effects, and the effects of distinct sites were non-additive. This study provides insight into the Dishevelled regulation by PDZ phosphorylation. Furthermore, the observed effects could be used to elucidate the regulation mechanisms in other PDZ domains.

Identifiers

PMID33452274
PMCPMC7810883
OpenAlexW3123658915

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.