Evidence map›Paper›PMID 33451348›Full record

ArticleGenome medicine2021

The identification of novel immunogenic antigens as potential Shigella vaccine components.

Ruklanthi de Alwis, Li Liang, Omid Taghavian, Emma Werner, Hao Chung The, Trang Nguyen Hoang Thu, Vu Thuy Duong, D Huw Davies, Philip L Felgner, Stephen Baker

Abstract read
In one paragraph

Article in Genome medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  15. Recent Progress inPathogens (Basel, Switzerland) · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ruklanthi de AlwisProgram in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore.
Li LiangVaccine Research & Development Center, School of Medicine, University of California Irvine, Irvine, CA, USA.
Omid TaghavianVaccine Research & Development Center, School of Medicine, University of California Irvine, Irvine, CA, USA.
Emma WernerLaboratory of Molecular Biology, Cambridge Biomedical Campus, Cambridge, UK.
Hao Chung TheThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Trang Nguyen Hoang ThuThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Vu Thuy DuongThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
D Huw DaviesVaccine Research & Development Center, School of Medicine, University of California Irvine, Irvine, CA, USA.
Philip L FelgnerVaccine Research & Development Center, School of Medicine, University of California Irvine, Irvine, CA, USA.
Stephen BakerCambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Level 5, Jeffery Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Cambridge, CB2 0AW, UK. sgb47@medschl.cam.ac.uk.ORCID 0000-0003-1308-5755

Funding

Medical Research Council MC_U105170648Wellcome TrustWellcome Trust 215515/Z/19/Z
6 · The paper itself

Abstract

backgroundShigella is a major diarrheal pathogen for which there is presently no vaccine. Whole genome sequencing provides the ability to predict and derive novel antigens for use as vaccines. Here, we aimed to identify novel immunogenic Shigella antigens that could serve as Shigella vaccine candidates, either alone, or when conjugated to Shigella O-antigen.

methodsUsing a reverse vaccinology approach, where genomic analysis informed the Shigella immunome via an antigen microarray, we aimed to identify novel immunogenic Shigella antigens. A core genome analysis of Shigella species, pathogenic and non-pathogenic Escherichia coli, led to the selection of 234 predicted immunogenic Shigella antigens. These antigens were expressed and probed with acute and convalescent serum from microbiologically confirmed Shigella infections.

resultsSeveral Shigella antigens displayed IgG and IgA seroconversion, with no difference in sero-reactivity across by sex or age. IgG sero-reactivity to key Shigella antigens was observed at birth, indicating transplacental antibody transfer. Six antigens (FepA, EmrK, FhuA, MdtA, NlpB, and CjrA) were identified in in vivo testing as capable of producing binding IgG and complement-mediated bactericidal antibody.

conclusionsThese findings provide six novel immunogenic Shigella proteins that could serve as candidate vaccine antigens, species-specific carrier proteins, or targeted adjuvants.

Indexed as

Antibody FormationAntigens, BacterialBacterial ProteinsComputational BiologyDysentery, BacillaryFetal BloodGenome, HumanHumansImmunizationImmunoglobulin GSeroconversionShigella VaccinesAntigens, BacterialBacterial ProteinsImmunoglobulin GShigella Vaccines

Identifiers

PMID33451348
PMCPMC7809897

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.