Evidence map›Paper›PMID 33450185›Full record

ArticleCell stem cell2021

Histone crotonylation promotes mesoendodermal commitment of human embryonic stem cells.

Yi Fang, Xiaojiang Xu, Jun Ding, Lu Yang, Mary T Doan, Peer W F Karmaus, Nathaniel W Snyder, Yingming Zhao, Jian-Liang Li, Xiaoling Li

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
9.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 143 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. The Landscape and Regulation of Histone Crotonylation in Mammalian Gametes and Early Embryos.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Crosstalk BetweenCancers · 2026
    Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Epigenetic alterations in Myeloid Malignancies.Advances in experimental medicine and biology · 2026
    Review
  17. Epigenetic remodeling during early embryonic development.Frontiers in cell and developmental biology · 2026
    Review
  18. Review
  19. Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Yi FangSignal Transduction Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA. Electronic address: yi.fang@nih.gov.
Xiaojiang XuIntegrative Bioinformatics Support Group, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA.
Jun DingBen May Department for Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Lu YangBen May Department for Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Mary T DoanCenter for Metabolic Disease Research, Department of Microbiology and Immunology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA 19140, USA.
Peer W F KarmausImmunity, Inflammation, and Disease Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA.
Nathaniel W SnyderCenter for Metabolic Disease Research, Department of Microbiology and Immunology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA 19140, USA.
Yingming ZhaoBen May Department for Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Jian-Liang LiIntegrative Bioinformatics Support Group, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA.
Xiaoling LiSignal Transduction Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709, USA. Electronic address: lix3@niehs.nih.gov.
National Institute of Environmental Health Sciences · USUniversity of Chicago · USTemple University · US

Funding

Sirtuins and nuclear receptors in aging and age-associated diseasesZIAES102205 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI LI, XIAOLING · 2009 to 2025
$42.4M
Biochemistry of the lysine beta-hydroxybutyrylation pathwayR01DK118266 · NIDDK · UNIVERSITY OF CHICAGO · PI COLE, PHILIP A, ZHAO, YINGMING · 2018 to 2021
$2.1M
SIRT6 and lysine fatty acylation in macrophage inflammationR01DK107868 · NIDDK · CORNELL UNIVERSITY · PI LIN, HENING, ZHAO, YINGMING · 2016 to 2019
$2.0M
Systems-wide analysis of histone lysine 2-hydroxyisobutyrylation pathwayR01GM115961 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, YINGMING · 2016 to 2019
$1.8M
Quantification of compartmentalized metabolism in eukaryotic systemsR01GM132261 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI SNYDER, NATHANIEL W. · 2019 to 2023
$1.8M
Metabolism of propionic acidR03HD092630 · NICHD · DREXEL UNIVERSITY · PI SNYDER, NATHANIEL W. · 2017 to 2018
$157k
Intramural NIH HHS ZIA ES102205NICHD NIH HHS R03 HD092630NIDDK NIH HHS R01 DK107868NIDDK NIH HHS R01 DK118266NIGMS NIH HHS R01 GM115961NIGMS NIH HHS R01 GM132261
6 · The paper itself

Abstract

Histone crotonylation is a non-acetyl histone lysine modification that is as widespread as acetylation. However, physiological functions associated with histone crotonylation remain almost completely unknown. Here we report that histone crotonylation is crucial for endoderm differentiation. We demonstrate that key crotonyl-coenzyme A (CoA)-producing enzymes are specifically induced in endodermal cells during differentiation of human embryonic stem cells (hESCs) in vitro and in mouse embryos, where they function to increase histone crotonylation and enhance endodermal gene expression. Chemical enhancement of histone crotonylation promotes endoderm differentiation of hESCs, whereas deletion of crotonyl-CoA-producing enzymes reduces histone crotonylation and impairs meso/endoderm differentiation in vitro and in vivo. Our study uncovers a histone crotonylation-mediated mechanism that promotes endodermal commitment of pluripotent stem cells, which may have important implications for therapeutic strategies against a number of human diseases.

Indexed as

HistonesHuman Embryonic Stem CellsAcetylationAnimalsCell DifferentiationLysineMiceProtein Processing, Post-TranslationalHistonesLysinecrotonylationembryogenesisembryonic stem cellsendoderm differentiationepigeneticsmetabolic switch

Identifiers

PMID33450185
PMCPMC8026719
OpenAlexW3121058674

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.