Evidence map›Paper›PMID 33450006›Full record

ArticleNucleic acids research2021

Evidence for multi-copy Mega-NUMTs in the human genome.

Sabine Lutz-Bonengel, Harald Niederstätter, Jana Naue, Rafal Koziel, Fengtang Yang, Timo Sänger, Gabriela Huber, Cordula Berger, René Pflugradt, Christina Strobl and 14 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Review
  2. Article
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  11. Article
  12. Review
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  14. Article
  15. Article
  16. Article
  17. Precision mitochondrial medicine.Cambridge prisms. Precision medicine · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Sabine Lutz-BonengelInstitute of Forensic Medicine, Medical Center, University of Freiburg and Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany.
Harald NiederstätterInstitute of Legal Medicine, Medical University of Innsbruck, Innsbruck 6020, Austria.
Jana NaueInstitute of Forensic Medicine, Medical Center, University of Freiburg and Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany.
Rafal KozielInstitute for Biomedical Aging Research, University of Innsbruck, Innsbruck 6020, Austria.
Fengtang YangWellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Timo SängerInstitute of Forensic Medicine, Medical Center, University of Freiburg and Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany.
Gabriela HuberInstitute of Legal Medicine, Medical University of Innsbruck, Innsbruck 6020, Austria.
Cordula BergerInstitute of Legal Medicine, Medical University of Innsbruck, Innsbruck 6020, Austria.
René PflugradtState Investigation Department of Lower Saxony, Hannover 30169, Germany.
Christina StroblInstitute of Legal Medicine, Medical University of Innsbruck, Innsbruck 6020, Austria.
Catarina XavierInstitute of Legal Medicine, Medical University of Innsbruck, Innsbruck 6020, Austria.
Marianne VollethMagdeburg University Hospital, Institute of Human Genetics, Otto von Guericke University, Magdeburg 39120, Germany.
Sandra Carina WeißInstitute of Experimental and Clinical Pharmacology and Toxicology, University of Freiburg, Freiburg 79104, Germany.
Jodi A IrwinDNA Support Unit, FBI Laboratory, Quantico, VA 22135, USA.
Erica L RomsosU.S. National Institute of Standards and Technology, Biomolecular Measurement Division, Gaithersburg, MD 20899, USA.
Peter M ValloneU.S. National Institute of Standards and Technology, Biomolecular Measurement Division, Gaithersburg, MD 20899, USA.
Gudrun RatzingerDepartment of Dermatology, Venereology and Allergy, Medical University of Innsbruck, Innsbruck 6020, Austria.
Matthias SchmuthDepartment of Dermatology, Venereology and Allergy, Medical University of Innsbruck, Innsbruck 6020, Austria.
Pidder Jansen-DürrInstitute for Biomedical Aging Research, University of Innsbruck, Innsbruck 6020, Austria.
Thomas LiehrJena University Hospital, Institute of Human Genetics, Friedrich Schiller University, Jena 07747, Germany.
Peter LichterGerman Cancer Research Center, Molecular Genetics, Heidelberg 69120, Germany.
Thomas J ParsonsInternational Commission on Missing Persons, The Hague 2514 AA, Netherlands.
Stefan PollakInstitute of Forensic Medicine, Medical Center, University of Freiburg and Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany.
Walther ParsonInstitute of Legal Medicine, Medical University of Innsbruck, Innsbruck 6020, Austria.

Funding

Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

The maternal mode of mitochondrial DNA (mtDNA) inheritance is central to human genetics. Recently, evidence for bi-parental inheritance of mtDNA was claimed for individuals of three pedigrees that suffered mitochondrial disorders. We sequenced mtDNA using both direct Sanger and Massively Parallel Sequencing in several tissues of eleven maternally related and other affiliated healthy individuals of a family pedigree and observed mixed mitotypes in eight individuals. Cells without nuclear DNA, i.e. thrombocytes and hair shafts, only showed the mitotype of haplogroup (hg) V. Skin biopsies were prepared to generate ρ° cells void of mtDNA, sequencing of which resulted in a hg U4c1 mitotype. The position of the Mega-NUMT sequence was determined by fluorescence in situ hybridization and two different quantitative PCR assays were used to determine the number of contributing mtDNA copies. Thus, evidence for the presence of repetitive, full mitogenome Mega-NUMTs matching haplogroup U4c1 in various tissues of eight maternally related individuals was provided. Multi-copy Mega-NUMTs mimic mixtures of mtDNA that cannot be experimentally avoided and thus may appear in diverse fields of mtDNA research and diagnostics. We demonstrate that hair shaft mtDNA sequencing provides a simple but reliable approach to exclude NUMTs as source of misleading results.

Indexed as

DNA, MitochondrialGenome, HumanCell NucleusDNA Copy Number VariationsFemaleHumansMalePedigreeSequence Analysis, DNADNA, Mitochondrial

Identifiers

PMID33450006
PMCPMC7897518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.