Evidence map›Paper›PMID 33446637›Full record

ArticleCell death & disease2021

PU.1 drives specification of pluripotent stem cell-derived endothelial cells to LSEC-like cells.

Jonathan De Smedt, Elise Anne van Os, Irene Talon, Sreya Ghosh, Burak Toprakhisar, Rodrigo Furtado Madeiro Da Costa, Samantha Zaunz, Marta Aguirre Vazquez, Ruben Boon, Pieter Baatsen and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

  1. The Scavenger Function of LSECs, a Regulator of Liver Diseases.Current issues in molecular biology · 2026
    Review
  2. Periodontitis and MASLD: a narrative review of the direct oral-hepatic pathway.Frontiers in cellular and infection microbiology · 2026
    Review
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  14. Liver endothelial cells in NAFLD and transition to NASH and HCC.Cellular and molecular life sciences : CMLS · 2023
    Review
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  16. Advancements in MAFLD Modeling with Human Cell and Organoid Models.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Jonathan De SmedtDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium. jonathandesmedt92@gmail.com.ORCID 0000-0002-8374-4923
Elise Anne van OsLiver Cell Biology research group, Vrije Universiteit Brussel (VUB), Brussels, Belgium.
Irene TalonDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Sreya GhoshDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Burak ToprakhisarDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Rodrigo Furtado Madeiro Da CostaDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Samantha ZaunzDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Marta Aguirre VazquezDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Ruben BoonThe Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA, 02114, USA.ORCID 0000-0002-9355-674X
Pieter BaatsenElectron Microscopy Platform of VIB Bio Imaging Core at KU Leuven and VIB-KU Leuven Center for Brain & Disease Research, Leuven, Belgium.
Ayla SmoutLiver Cell Biology research group, Vrije Universiteit Brussel (VUB), Brussels, Belgium.
Stefaan VerhulstLiver Cell Biology research group, Vrije Universiteit Brussel (VUB), Brussels, Belgium.ORCID 0000-0001-6566-6071
Leo A van Grunsven *Liver Cell Biology research group, Vrije Universiteit Brussel (VUB), Brussels, Belgium.ORCID 0000-0002-0990-7034
Catherine M Verfaillie *Department of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium. catherine.verfaillie@kuleuven.be.ORCID 0000-0001-7564-4079
KU Leuven · BEVrije Universiteit Brussel · BEBroad Institute · USRega Institute for Medical Research · BEStem Cell Institute · PAVIB-KU Leuven Center for Brain & Disease Research · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To date, there is no representative in vitro model for liver sinusoidal endothelial cells (LSECs), as primary LSECs dedifferentiate very fast in culture and no combination of cytokines or growth factors can induce an LSEC fate in (pluripotent stem cell (PSC)-derived) endothelial cells (ECs). Furthermore, the transcriptional programmes driving an LSEC fate have not yet been described. Here, we first present a computational workflow (CenTFinder) that can identify transcription factors (TFs) that are crucial for modulating pathways involved in cell lineage specification. Using CenTFinder, we identified several novel LSEC-specific protein markers, such as FCN2 and FCN3, which were validated by analysis of previously published single-cell RNAseq data. We also identified PU.1 (encoded by the SPI1 gene) as a major regulator of LSEC-specific immune functions. We show that SPI1 overexpression (combined with the general EC TF ETV2) in human PSCs induces ECs with an LSEC-like phenotype. The ETV2-SPI1-ECs display increased expression of LSEC markers, such as CD32B and MRC1, as well as several of the proposed novel markers. More importantly, ETV2-SPI1-ECs acquire LSEC functions, including uptake of FSA-FITC, as well as labelled IgG. In conclusion, we present the CenTFinder computational tool to identify key regulatory TFs within specific pathways, in this work pathways of lineage specification, and we demonstrate its use by the identification and validation of PU.1 as a master regulator for LSEC fating.

Indexed as

AnimalsCell LineageCells, CulturedEmbryonic Stem CellsEndothelial CellsHumansLiverMiceMice, Inbred BALB CPluripotent Stem CellsProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-ActivatorsProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-Activators

Identifiers

PMID33446637
PMCPMC7809369
OpenAlexW3120774788

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.