Evidence map›Paper›PMID 33446636›Full record

ArticleNature communications2021

An N-terminal conserved region in human Atg3 couples membrane curvature sensitivity to conjugase activity during autophagy.

Yansheng Ye, Erin R Tyndall, Van Bui, Zhenyuan Tang, Yan Shen, Xuejun Jiang, John M Flanagan, Hong-Gang Wang, Fang Tian

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

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  14. Recent Advances in NMR Protein Structure Prediction with ROSETTA.International journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yansheng Ye *Departments of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA, USA.
Erin R Tyndall *Departments of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA, USA.
Van Bui *Department of Pediatrics, Penn State College of Medicine, Hershey, PA, USA.
Zhenyuan TangDepartment of Pediatrics, Penn State College of Medicine, Hershey, PA, USA.
Yan ShenLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, US National Institutes of Health, Bethesda, MD, USA.
Xuejun JiangCell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-8670-3828
John M FlanaganDepartments of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA, USA.
Hong-Gang WangDepartment of Pediatrics, Penn State College of Medicine, Hershey, PA, USA. huw11@psu.edu.ORCID 0000-0003-0551-0571
Fang TianDepartments of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA, USA. ftian@psu.edu.ORCID 0000-0002-5881-6155
Penn State Milton S. Hershey Medical Center · USMemorial Sloan Kettering Cancer Center · USNational Institutes of Health · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Mechanisms and Function of Autophagy in CancerR01CA166413 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JIANG, XUEJUN · 2013 to 2023
$3.9M
Non-canonical Caspase-8 Activation on Autophagosomal MembranesR01CA222349 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HONG-GANG WANG · 2018 to 2026
$3.0M
Autophagosome closure by the ESCRT machineryR01GM127954 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI WANG, HONG-GANG · 2018 to 2025
$2.7M
Structural and Molecular Basis of Human ATG3 Activation and Regulation for LC3 Lipid Conjugation in AutophagyR01GM127730 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TIAN, FANG · 2019 to 2022
$1.7M
Molecular Insights into Membrane Curvature RecognitionR01GM105963 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TIAN, FANG · 2014 to 2018
$1.6M
Role of the ULK1 Complex in AutophagyR01GM113013 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI JIANG, XUEJUN · 2015 to 2018
$1.5M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA166413NCI NIH HHS R01 CA222349NIGMS NIH HHS R01 GM105963NIGMS NIH HHS R01 GM113013NIGMS NIH HHS R01 GM127730NIGMS NIH HHS R01 GM127954
6 · The paper itself

Abstract

During autophagy the enzyme Atg3 catalyzes the covalent conjugation of LC3 to the amino group of phosphatidylethanolamine (PE) lipids, which is one of the key steps in autophagosome formation. Here, we have demonstrated that an N-terminal conserved region of human Atg3 (hAtg3) communicates information from the N-terminal membrane curvature-sensitive amphipathic helix (AH), which presumably targets the enzyme to the tip of phagophore, to the C-terminally located catalytic core for LC3-PE conjugation. Mutations in the putative communication region greatly reduce or abolish the ability of hAtg3 to catalyze this conjugation in vitro and in vivo, and alter the membrane-bound conformation of the wild-type protein, as reported by NMR. Collectively, our results demonstrate that the N-terminal conserved region of hAtg3 works in concert with its geometry-selective AH to promote LC3-PE conjugation only on the target membrane, and substantiate the concept that highly curved membranes drive spatial regulation of the autophagosome biogenesis during autophagy.

Indexed as

AutophagyAutophagy-Related ProteinsBiocatalysisCell MembraneHumansMicrotubule-Associated ProteinsProtein Conformation, alpha-HelicalProtein DomainsUbiquitin-Conjugating EnzymesATG3 protein, humanAutophagy-Related ProteinsMAP1LC3A protein, humanMicrotubule-Associated ProteinsUbiquitin-Conjugating Enzymes

Identifiers

PMID33446636
PMCPMC7809043
OpenAlexW3125194856

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.