Evidence map›Paper›PMID 33446502›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

An in vivo screen of noncoding loci reveals that

Christian C D Harman, Will Bailis, Jun Zhao, Louisa Hill, Rihao Qu, Ruaidhrí P Jackson, Justin A Shyer, Holly R Steach, Yuval Kluger, Loyal A Goff and 4 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. A TNature aging · 2023
    Article
  3. The ubiquitin ligase Cul5 regulates CD4Nature communications · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Christian C D HarmanDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520.ORCID 0000-0003-4758-8836
Will BailisDivision of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA 19104.ORCID 0000-0001-9420-6250
Jun ZhaoDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520.
Louisa HillResearch Institute of Molecular Pathology, Vienna Biocenter, 1030 Vienna, Austria.ORCID 0000-0002-6258-6161
Rihao QuDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520.
Ruaidhrí P JacksonDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520.
Justin A ShyerDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520.
Holly R SteachDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520.
Yuval KlugerDepartment of Pathology, Yale School of Medicine, New Haven, CT 06510.
Loyal A GoffBroad Institute of MIT and Harvard, Cambridge, MA 02142.ORCID 0000-0003-2875-451X
John L RinnBroad Institute of MIT and Harvard, Cambridge, MA 02142.ORCID 0000-0002-7231-7539
Adam WilliamsThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Jorge Henao-MejiaDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Richard A FlavellHoward Hughes Medical Institute, New Haven, CT 06520; richard.flavell@yale.edu.
Yale University · USBroad Institute · USHoward Hughes Medical Institute · USChildren's Hospital of Philadelphia · USJackson Laboratory · USResearch Institute of Molecular Pathology · ATUniversity of Pennsylvania · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Identifying lincRNAs critical in asthma pathogenesisR21AI110776 · NIAID · YALE UNIVERSITY · PI FLAVELL, RICHARD A, WILLIAMS, ADAM · 2014 to 2015
$458k
The biochemical basis of immune cell reprogramming: how cellular metabolism regulates epigenetic remodeling during T cell differentiationK22AI141758 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI BAILIS, WILL H. · 2019 to 2020
$270k
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NIAID NIH HHS K22 AI141758NIAID NIH HHS R21 AI110776
6 · The paper itself

Abstract

Haematopoiesis relies on tightly controlled gene expression patterns as development proceeds through a series of progenitors. While the regulation of hematopoietic development has been well studied, the role of noncoding elements in this critical process is a developing field. In particular, the discovery of new regulators of lymphopoiesis could have important implications for our understanding of the adaptive immune system and disease. Here we elucidate how a noncoding element is capable of regulating a broadly expressed transcription factor, Ikaros, in a lymphoid lineage-specific manner, such that it imbues Ikaros with the ability to specify the lymphoid lineage over alternate fates. Deletion of the

Indexed as

AnimalsCell DifferentiationCell LineageDNA-Binding ProteinsGene DeletionGene Expression Regulation, DevelopmentalHematopoiesisIkaros Transcription FactorLymphopoiesisMiceRNA, UntranslatedDNA-Binding ProteinsIkaros Transcription FactorRNA, UntranslatedZfpn1a1 protein, mousehematopoiesisIkaroslymphocytesnoncoding

Identifiers

PMID33446502
PMCPMC7826330
OpenAlexW3118783427

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.