Evidence map›Paper›PMID 33444365›Full record

ArticlePloS one2021

Arachis hypogaea resveratrol synthase 3 alters the expression pattern of UDP-glycosyltransferase genes in developing rice seeds.

Choonseok Lee, Woo-Jong Hong, Ki-Hong Jung, Ha-Cheol Hong, Dool-Yi Kim, Hyun-Choong Ok, Man-Soo Choi, Soo-Kwon Park, Jaehyun Kim, Hee-Jong Koh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. The first chromosome-levelHorticulture research · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Choonseok LeeDepartment of Plant Science, Research Institute for Agriculture and Life Sciences, and Plant Genomics and Breeding Institute, Seoul National University, Seoul, Republic of Korea.
Woo-Jong HongGraduate School of Biotechnology, Kyung Hee University, Yongin, Gyeonggi-do, Republic of Korea.ORCID 0000-0001-7240-6171
Ki-Hong JungGraduate School of Biotechnology, Kyung Hee University, Yongin, Gyeonggi-do, Republic of Korea.
Ha-Cheol HongNational Institute of Agricultural Sciences, Wanju, Jeollabuk-do, Republic of Korea.
Dool-Yi KimNational Institute of Crop Science, Wanju, Jeollabuk-do, Republic of Korea.
Hyun-Choong OkRural Development Administration, Jeonju, Jeollabuk-do, Republic of Korea.
Man-Soo ChoiNational Institute of Crop Science, Wanju, Jeollabuk-do, Republic of Korea.
Soo-Kwon ParkRural Development Administration, Jeonju, Jeollabuk-do, Republic of Korea.
Jaehyun KimNational Institute of Crop Science, Wanju, Jeollabuk-do, Republic of Korea.
Hee-Jong KohDepartment of Plant Science, Research Institute for Agriculture and Life Sciences, and Plant Genomics and Breeding Institute, Seoul National University, Seoul, Republic of Korea.ORCID 0000-0002-4357-7008
Kyung Hee University · KRRural Development Administration · KRSeoul National University · KRNational Institute of Agricultural Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The resveratrol-producing rice (Oryza sativa L.) inbred lines, Iksan 515 (I.515) and Iksan 526 (I.526), developed by the expression of the groundnut (Arachis hypogaea) resveratrol synthase 3 (AhRS3) gene in the japonica rice cultivar Dongjin, accumulated both resveratrol and its glucoside, piceid, in seeds. Here, we investigated the effect of the AhRS3 transgene on the expression of endogenous piceid biosynthesis genes (UGTs) in the developing seeds of the resveratrol-producing rice inbred lines. Ultra-performance liquid chromatography (UPLC) analysis revealed that I.526 accumulates significantly higher resveratrol and piceid in seeds than those in I.515 seeds and, in I.526 seeds, the biosynthesis of resveratrol and piceid reached peak levels at 41 days after heading (DAH) and 20 DAH, respectively. Furthermore, RNA-seq analysis showed that the expression patterns of UGT genes differed significantly between the 20 DAH seeds of I.526 and those of Dongjin. Quantitative real-time PCR (RT-qPCR) analyses confirmed the data from RNA-seq analysis in seeds of Dongjin, I.515 and I.526, respectively, at 9 DAH, and in seeds of Dongjin and I.526, respectively, at 20 DAH. A total of 245 UGTs, classified into 31 UGT families, showed differential expression between Dongjin and I.526 seeds at 20 DAH. Of these, 43 UGTs showed more than 2-fold higher expression in I.526 seeds than in Dongjin seeds. In addition, the expression of resveratrol biosynthesis genes (PAL, C4H and 4CL) was also differentially expressed between Dongjin and I.526 developing seeds. Collectively, these data suggest that AhRS3 altered the expression pattern of UGT genes, and PAL, C4H and 4CL in developing rice seeds.

Indexed as

AcyltransferasesArachisGlycosyltransferasesOryzaPlant ProteinsResveratrolSeedsTransgenesUridine DiphosphateAcyltransferasesGlycosyltransferasesPlant ProteinsResveratrolresveratrol synthaseUridine Diphosphate

Identifiers

PMID33444365
PMCPMC7808588
OpenAlexW3120795617

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.