Evidence map›Paper›PMID 33443652›Full record

ArticleTropical animal health and production2021

Assessment of genetic diversity and population structure of Colombian Creole cattle using microsatellites.

Ricardo José Ocampo, Juan Felipe Martínez, Rodrigo Martínez

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In one paragraph

Article in Tropical animal health and production, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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  8. Genetic Differentiation among Livestock Breeds-Values for FAnimals : an open access journal from MDPI · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ricardo José OcampoCorporación Colombiana de Investigación Agropecuaria - AGROSAVIA, Research Center El Nus, Corregimiento San José del Nus, Municipio de San Roque, 250047, Antioquia, Colombia. rocampo@agrosavia.co.ORCID http://orcid.org/0000-0001-5704-7844
Juan Felipe MartínezCorporación Colombiana de Investigación Agropecuaria - AGROSAVIA, Research Center El Nus, Corregimiento San José del Nus, Municipio de San Roque, 250047, Antioquia, Colombia.ORCID https://orcid.org/0000-0003-2778-9243
Rodrigo MartínezCorporación Colombiana de Investigación Agropecuaria - AGROSAVIA, Research Center El Nus, Corregimiento San José del Nus, Municipio de San Roque, 250047, Antioquia, Colombia.
Colombian Corporation for Agricultural Research - AGROSAVIA · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To establish the diversity, structure, and phylogenetic relationships among Colombian Creole cattle, six native breeds and one introduced breed were genotyped for 20 microsatellite loci. The average number of alleles per breed ranged from 7050 (Romosinuano) to 10,100 (Casanareño), and the expected heterozygosity ranged from 0.691 (San martinero) to 0.785 (Casanareño). The deviation from the Hardy-Weinberg equilibrium (HWE) was statistically significant (p < 0.05) in 59 out of 120 tests carried out in the six breeds for the 20 microsatellite loci analyzed. Colombian Creole bovine breeds have maintained a high level of genetic differentiation within the same populations (93%), and the rest is explained by differences between breeds (7%). The differentiation pattern and the genetic relationships between the Colombian Creole bovine breeds showed high consistency with the evolutionary history of each. Both the Bayesian grouping analysis and the neighbor-joining tree exhibited a reliable grouping pattern, which revealed two main groups: one comprised by the breeds Blanco Orejinegro, Hartón del Valle, Costeño Con Cuernos, Romosinuano, and San Martinero, and the other one by the Creole breed Casanareño and Zebu. These were probably caused by different historical, reproductive, and geographic isolation precedents, as well as by different levels of inbreeding. This study will help understand the genetic characteristics of Colombian Creole cattle and will benefit future conservation programs.

Indexed as

Genetics, PopulationGenetic VariationMicrosatellite RepeatsAnimalsBayes TheoremCattleColombiaPhylogenyAnimal genetic resourcesConservationDNANative cattleSTR

Identifiers

PMID33443652
OpenAlexW3120486576

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.