Evidence map›Paper›PMID 33443180›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

A rate threshold mechanism regulates MAPK stress signaling and survival.

Amanda N Johnson, Guoliang Li, Hossein Jashnsaz, Alexander Thiemicke, Benjamin K Kesler, Dustin C Rogers, Gregor Neuert

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Trainable computation in molecular networks.bioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Article
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  5. Phenotypic consequences of logarithmic signaling in MAPK stress response.bioRxiv : the preprint server for biology · 2023
    Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Amanda N JohnsonDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232.ORCID 0000-0001-7594-6747
Guoliang LiDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232.
Hossein JashnsazDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232.ORCID 0000-0002-4699-9871
Alexander ThiemickeDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232.ORCID 0000-0002-9822-1017
Benjamin K KeslerDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232.
Dustin C RogersDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232.
Gregor NeuertDepartment of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, TN 37232; gregor.neuert@vanderbilt.edu.ORCID 0000-0002-8928-6425
Vanderbilt University · US

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
TRAINING PROGRAM IN ION CHANNEL AND TRANSPORTER BIOLOGYT32NS007491 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENTON, JEROD S. · 2001 to 2020
$4.1M
DECODING THE NONCODING GENOME: LNCRNA DYNAMICS AND FUNCTION IN SINGLE CELLSDP2GM114849 · NIGMS · VANDERBILT UNIVERSITY · PI NEUERT, GREGOR · 2014 to 2014
$2.4M
Molecular Mechanism of Gene Transcription ActivationR01GM115892 · NIGMS · VANDERBILT UNIVERSITY · PI NEUERT, GREGOR · 2015 to 2018
$1.2M
High-Performance Computer Cluster for Biomedical ResearchS10OD023680 · OD · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2017 to 2017
$587k
NIGMS NIH HHS DP2 GM114849NIGMS NIH HHS R01 GM115892NIGMS NIH HHS T32 GM008320NIH HHS S10 OD023680NINDS NIH HHS T32 NS007491
6 · The paper itself

Abstract

Cells are exposed to changes in extracellular stimulus concentration that vary as a function of rate. However, how cells integrate information conveyed from stimulation rate along with concentration remains poorly understood. Here, we examined how varying the rate of stress application alters budding yeast mitogen-activated protein kinase (MAPK) signaling and cell behavior at the single-cell level. We show that signaling depends on a rate threshold that operates in conjunction with stimulus concentration to determine the timing of MAPK signaling during rate-varying stimulus treatments. We also discovered that the stimulation rate threshold and stimulation rate-dependent cell survival are sensitive to changes in the expression levels of the Ptp2 phosphatase, but not of another phosphatase that similarly regulates osmostress signaling during switch-like treatments. Our results demonstrate that stimulation rate is a regulated determinant of cell behavior and provide a paradigm to guide the dissection of major stimulation rate dependent mechanisms in other systems.

Indexed as

MAP Kinase Signaling SystemOsmotic PressureMitogen-Activated Protein KinasesProtein Tyrosine PhosphatasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsHOG1 protein, S cerevisiaeMitogen-Activated Protein KinasesProtein Tyrosine PhosphatasesPtp2 protein, S cerevisiaeSaccharomyces cerevisiae Proteinsrate thresholdsignal transductionsingle cellsystems biology

Identifiers

PMID33443180
PMCPMC7812835
OpenAlexW3115796380

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.