Evidence map›Paper›PMID 33443146›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

The Ligand of Ate1 is intrinsically disordered and participates in nucleolar phase separation regulated by Jumonji Domain Containing 6.

Akshaya Arva, Yasar Arfat T Kasu, Jennifer Duncan, Mosleh A Alkhatatbeh, Christopher S Brower

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. tRNAmicroPublication biology · 2024
    Article
  4. Widespread hydroxylation of unstructured lysine-rich protein domains by JMJD6.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Akshaya ArvaDepartment of Biology, Texas Woman's University, Denton, TX 76204.ORCID 0000-0002-9057-1186
Yasar Arfat T KasuDepartment of Biology, Texas Woman's University, Denton, TX 76204.ORCID 0000-0002-1627-7261
Jennifer DuncanDepartment of Biology, Texas Woman's University, Denton, TX 76204.ORCID 0000-0003-2690-3729
Mosleh A AlkhatatbehDepartment of Biology, Texas Woman's University, Denton, TX 76204.ORCID 0000-0003-4836-7437
Christopher S BrowerDepartment of Biology, Texas Woman's University, Denton, TX 76204 cbrower@twu.edu.
Texas Woman's University · US

Funding

Unraveling the Aggregation of TDP43 Fragments Associated with ALS and FTD: Insights into Protein Quality Control Mechanisms and Cellular VulnerabilityR15NS095317 · NINDS · TEXAS WOMAN'S UNIVERSITY · PI BROWER, CHRISTOPHER SCOTT · 2016 to 2025
$1.3M
NINDS NIH HHS R15 NS095317
6 · The paper itself

Abstract

The Ligand of Ate1 (Liat1) is a protein of unknown function that was originally discovered through its interaction with arginyl-tRNA protein transferase 1 (Ate1), a component of the Arg/N-degron pathway of protein degradation. Here, we characterized the functional domains of mouse Liat1 and found that its N-terminal half comprises an intrinsically disordered region (IDR) that facilitates its liquid-liquid phase separation (LLPS) in the nucleolus. Using bimolecular fluorescence complementation and immunocytochemistry, we found that Liat1 is targeted to the nucleolus by a low-complexity poly-K region within its IDR. We also found that the lysyl-hydroxylase activity of Jumonji Domain Containing 6 (Jmjd6) modifies Liat1, in a manner that requires the Liat1 poly-K region, and inhibits its nucleolar targeting and potential functions. In sum, this study reveals that Liat1 participates in nucleolar LLPS regulated by Jmjd6.

Indexed as

AminoacyltransferasesAnimalsCell NucleolusHEK293 CellsHumansIntrinsically Disordered ProteinsJumonji Domain-Containing Histone DemethylasesLigandsLiquid-Liquid ExtractionMiceNuclear ProteinsPhase TransitionProtein BindingProtein DomainsProteolysisReceptors, Cell Surface1700016k19rik protein, mouseAminoacyltransferasesarginyltransferaseC17orf97 protein, humanIntrinsically Disordered ProteinsJMJD6 protein, humanJumonji Domain-Containing Histone DemethylasesLigandsNuclear ProteinsPtdsr protein, mouseReceptors, Cell Surfaceintrinsically disordered proteinJmjd6Liat1liquid–liquid phase separationnucleolus

Identifiers

PMID33443146
PMCPMC7817205
OpenAlexW3115147499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.