Evidence map›Paper›PMID 33441579›Full record

ArticleScientific reports2021

Human leukocyte antigen class II quantification by targeted mass spectrometry in dendritic-like cell lines and monocyte-derived dendritic cells.

A Casasola-LaMacchia, M S Ritorto, R J Seward, N Ahyi-Amendah, A Ciarla, T P Hickling, H Neubert

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

A Casasola-LaMacchiaQuantitative Biomarkers and Biomeasures, BioMedicine Design, Pfizer, Inc., Andover, MA, USA. Marcela.Casasola-LaMacchia@pfizer.com.
M S RitortoQuantitative Biomarkers and Biomeasures, BioMedicine Design, Pfizer, Inc., Andover, MA, USA.
R J SewardQuantitative Biomarkers and Biomeasures, BioMedicine Design, Pfizer, Inc., Andover, MA, USA.
N Ahyi-AmendahImmunogenicity Sciences, BioMedicine Design, Pfizer, Inc., Andover, MA, USA.
A CiarlaImmunogenicity Sciences, BioMedicine Design, Pfizer, Inc., Andover, MA, USA.
T P HicklingImmunogenicity Sciences, BioMedicine Design, Pfizer, Inc., Andover, MA, USA.
H NeubertQuantitative Biomarkers and Biomeasures, BioMedicine Design, Pfizer, Inc., Andover, MA, USA.
Pfizer (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major histocompatibility complex II (HLA-II) facilitates the presentation of antigen-derived peptides to CD4+ T-cells. Antigen presentation is not only affected by peptide processing and intracellular trafficking, but also by mechanisms that govern HLA-II abundance such as gene expression, biosynthesis and degradation. Herein we describe a mass spectrometry (MS) based HLA-II-protein quantification method, applied to dendritic-like cells (KG-1 and MUTZ-3) and human monocyte-derived dendritic cells (DCs). This method monitors the proteotypic peptides VEHWGLDKPLLK, VEHWGLDQPLLK and VEHWGLDEPLLK, mapping to the α-chains HLA-DQA1, -DPA1 and -DRA1/DQA2, respectively. Total HLA-II was detected at 176 and 248 fmol per million unstimulated KG-1 and MUTZ-3 cells, respectively. In contrast, TNF- and LPS-induced MUTZ-3 cells showed a 50- and 200-fold increase, respectively, of total α-chain as measured by MS. HLA-II protein levels in unstimulated DCs varied significantly between donors ranging from ~ 4 to ~ 50 pmol per million DCs. Cell surface HLA-DR levels detected by flow cytometry increased 2- to 3-fold after DC activation with lipopolysaccharide (LPS), in contrast to a decrease or no change in total HLA α-chain as determined by MS. HLA-DRA1 was detected as the predominant variant, representing > 90% of total α-chain, followed by DPA1 and DQA1 at 3-7% and ≤ 1%, respectively.

Indexed as

Amino Acid SequenceAntigen PresentationBlotting, WesternCell LineChromatography, LiquidDendritic CellsHistocompatibility Antigens Class IIHLA-D AntigensHumansLipopolysaccharidesMonocytesOligopeptidesTandem Mass SpectrometryHistocompatibility Antigens Class IIHLA-D AntigensLipopolysaccharidesOligopeptides

Identifiers

PMID33441579
PMCPMC7807004
OpenAlexW3119086775

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.