Evidence map›Paper›PMID 33441120›Full record

ArticleBMC biotechnology2021

Different genome-wide transcriptome responses of Nocardioides simplex VKM Ac-2033D to phytosterol and cortisone 21-acetate.

Victoria Yu Shtratnikova, Mikhail I Sсhelkunov, Victoria V Fokina, Eugeny Y Bragin, Andrey A Shutov, Marina V Donova

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Degradation of CCurrent microbiology · 2025
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  5. Article
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  7. Molecules (Basel, Switzerland) · 2023
    Review
  8. Current Trends and Perspectives in Microbial Bioconversions of Steroids.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Insight into Different Stages of Steroid Degradation in ThermophilicInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Review
  12. A New 3-Ketosteroid-ΔMicroorganisms · 2022
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Victoria Yu ShtratnikovaBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie gory, h. 1, b. 40, Moscow, Russian Federation, 119991. vtosha@yandex.ru.ORCID 0000-0002-3118-7977
Mikhail I SсhelkunovSkolkovo Institute of Science and Technology, Nobelya str., 3, Moscow, Russian Federation, 121205.ORCID 0000-0001-8804-7281
Victoria V FokinaG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Center for Biological Research of the Russian Academy of Sciences", pr. Nauki, 5, Pushchino, Moscow Region, Russian Federation, 142290.ORCID 0000-0002-7148-4829
Eugeny Y BraginG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Center for Biological Research of the Russian Academy of Sciences", pr. Nauki, 5, Pushchino, Moscow Region, Russian Federation, 142290.ORCID 0000-0002-8898-9401
Andrey A ShutovG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Center for Biological Research of the Russian Academy of Sciences", pr. Nauki, 5, Pushchino, Moscow Region, Russian Federation, 142290.ORCID 0000-0002-9501-8072
Marina V DonovaG.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Center for Biological Research of the Russian Academy of Sciences", pr. Nauki, 5, Pushchino, Moscow Region, Russian Federation, 142290.ORCID 0000-0002-9917-8428
Institute of Protein Research · RUG. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms · RULomonosov Moscow State University · RUSkolkovo Institute of Science and Technology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBacterial degradation/transformation of steroids is widely investigated to create biotechnologically relevant strains for industrial application. The strain of Nocardioides simplex VKM Ac-2033D is well known mainly for its superior 3-ketosteroid Δ

resultsAlthough the gene patterns induced by phytosterol generally resemble the gene sets involved in phytosterol degradation pathways in mycolic acid rich actinobacteria such as Mycolicibacterium, Mycobacterium and Rhodococcus species, the differences in gene organization and previously unreported genes with high expression level were revealed. Transcription of the genes related to KstR- and KstR2-regulons was mainly enhanced in response to phytosterol, and the role in steroid catabolism is predicted for some dozens of the genes in N. simplex. New transcription factors binding motifs and new candidate transcription regulators of steroid catabolism were predicted in N. simplex. Unlike phytosterol, cortisone 21-acetate does not provide induction of the genes with predicted KstR and KstR2 sites. Superior 3-ketosteroid-Δ

conclusionThe results contribute to the knowledge of biocatalytic features and diversity of steroid modification capabilities of actinobacteria, defining targets for further bioengineering manipulations with the purpose of expansion of their biotechnological applications.

Indexed as

TranscriptomeActinobacteriaBacterial ProteinsCortisoneGene Expression ProfilingGene Expression Regulation, BacterialMetabolic EngineeringMetabolismMycobacteriumNocardioidesOxidoreductasesPhytosterolsProgesteroneRhodococcusSteroidsTranscription Factors3-oxosteroid delta(1) dehydrogenaseBacterial ProteinsCortisoneOxidoreductasesPhytosterolsProgesteroneSteroidsTranscription FactorsArthrobacter simplexBiocatalystsCortisone acetateNocardioides simplexPhytosterolPimelobacter simplexProgesteroneTranscriptome

Identifiers

PMID33441120
PMCPMC7807495
OpenAlexW3120877367

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.