Evidence map›Paper›PMID 33439421›Full record

ArticleBehavior genetics2021

Combining Structural-Equation Modeling with Genomic-Relatedness-Matrix Restricted Maximum Likelihood in OpenMx.

Robert M Kirkpatrick, Joshua N Pritikin, Michael D Hunter, Michael C Neale

Abstract read
In one paragraph

Article in Behavior genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Robert M KirkpatrickVirginia Commonwealth University, Richmond, USA. robert.kirkpatrick@vcuhealth.org.
Joshua N PritikinVirginia Commonwealth University, Richmond, USA.
Michael D HunterGeorgia Institute of Technology, Atlanta, USA.
Michael C NealeVirginia Commonwealth University, Richmond, USA.

Funding

Adolescent Substance Use Initiation: Disentangling neurocognitive risks from consequences using longitudinal and genetically-informed methodsU01DA041120 · NIDA · UNIVERSITY OF MINNESOTA · PI Monica Luciana, Sylia Wilson · 2015 to 2026
$34.5M
Examining Brain Development, Context, and Culture as Mediators and Moderators of the Relation between Adverse Childhood Experiences (ACEs) and Substance (Ab)useU01DA051037 · NIDA · VIRGINIA COMMONWEALTH UNIVERSITY · PI James M Bjork, MICHAEL CHURTON NEALE · 2020 to 2026
$11.0M
Research Education in Statistical Genetics of Substance AbuseR25DA026119 · NIDA · VIRGINIA COMMONWEALTH UNIVERSITY · PI NEALE, MICHAEL CHURTON · 2008 to 2018
$3.2M
Extensions of Mendelian Randomization Methodology for Combined Genomic and Methylomic AnalysisR01DA049867 · NIDA · VIRGINIA COMMONWEALTH UNIVERSITY · PI NEALE, MICHAEL CHURTON · 2020 to 2024
$1.9M
NIDA NIH HHS R01 DA049867NIDA NIH HHS R25 DA026119NIDA NIH HHS U01 DA041120NIDA NIH HHS U01 DA051037
6 · The paper itself

Abstract

There is a long history of fitting biometrical structural-equation models (SEMs) in the pregenomic behavioral-genetics literature of twin, family, and adoption studies. Recently, a method has emerged for estimating biometrical variance-covariance components based not upon the expected degree of genetic resemblance among relatives, but upon the observed degree of genetic resemblance among unrelated individuals for whom genome-wide genotypes are available-genomic-relatedness-matrix restricted maximum-likelihood (GREML). However, most existing GREML software is concerned with quickly and efficiently estimating heritability coefficients, genetic correlations, and so on, rather than with allowing the user to fit SEMs to multitrait samples of genotyped participants. We therefore introduce a feature in the OpenMx package, "mxGREML", designed to fit the biometrical SEMs from the pregenomic era in present-day genomic study designs. We explain the additional functionality this new feature has brought to OpenMx, and how the new functionality works. We provide an illustrative example of its use. We discuss the feature's current limitations, and our plans for its further development.

Indexed as

Analysis of VarianceBiometryGenome-Wide Association StudyGenomicsGenotypeLikelihood FunctionsModels, GeneticModels, TheoreticalPhenotypePolymorphism, Single NucleotideSoftwareStatistics as TopicTwinsGenomicsSoftwareStatistical methodsStructural equation modeling

Identifiers

PMID33439421
PMCPMC8096671

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.