Evidence map›Paper›PMID 33438729›Full record

ArticleGigaScience2021

Genome diversity in Ukraine.

Taras K Oleksyk, Walter W Wolfsberger, Alexandra M Weber, Khrystyna Shchubelka, Olga T Oleksyk, Olga Levchuk, Alla Patrus, Nelya Lazar, Stephanie O Castro-Marquez, Yaroslava Hasynets and 20 more

Abstract read
In one paragraph

Article in GigaScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Taras K OleksykDepartment of Biological Sciences, Uzhhorod National University, 32 Voloshyna Str., Uzhhorod 88000, Ukraine.
Walter W WolfsbergerDepartment of Biological Sciences, Uzhhorod National University, 32 Voloshyna Str., Uzhhorod 88000, Ukraine.
Alexandra M WeberDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.
Khrystyna ShchubelkaDepartment of Biological Sciences,Oakland University, Dodge Hall, 118 Library Dr., Rochester, MI 48309, USA.
Olga T OleksykA. Novak Transcarpathian Regional Clinical Hospital, Uzhhorod 88000, Ukraine.
Olga LevchukAstra Dia Inc., Uzhhorod 88000, Ukraine.
Alla PatrusAstra Dia Inc., Uzhhorod 88000, Ukraine.
Nelya LazarAstra Dia Inc., Uzhhorod 88000, Ukraine.
Stephanie O Castro-MarquezDepartment of Biological Sciences,Oakland University, Dodge Hall, 118 Library Dr., Rochester, MI 48309, USA.
Yaroslava HasynetsDepartment of Biological Sciences, Uzhhorod National University, 32 Voloshyna Str., Uzhhorod 88000, Ukraine.
Patricia BoldyzharDepartment of Medicine, Uzhhorod National University, Uzhhorod 88000, Ukraine.
Mikhailo NeymetVelyka Kopanya Family Hospital, Transcarpatia 90330, Ukraine.
Alina UrbanovychLviv National Medical University, Lviv 79010, Ukraine.
Viktoriya StakhovskaZhytomyr Regional Hospital, Zhytomyr 10002, Ukraine.
Kateryna MalyarI.I.Mechnikov Dnipro Regional Clinical Hospital, Dnipro 49000, Ukraine.
Svitlana ChervyakovaChernihiv Regional Hospital, Chernihiv 14039, Ukraine.
Olena PodorohaSumy Diagnostic Center, Sumy 40000, Ukraine.
Natalia KovalchukRivne Regional Specialized Hospital of Radiation Protection, Rivne 33028, Ukraine.
Juan L Rodriguez-FloresDepartment of Genetic Medicine, Weill Cornell Medical College, New York, NY 10065, USA.
Weichen ZhouDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.
Sarah MedleyDepartment of Biological Sciences,Oakland University, Dodge Hall, 118 Library Dr., Rochester, MI 48309, USA.
Fabia BattistuzziDepartment of Biological Sciences,Oakland University, Dodge Hall, 118 Library Dr., Rochester, MI 48309, USA.
Ryan LiuBGI Shenzhen, Shenzhen, 518083, China.
Yong HouBGI Shenzhen, Shenzhen, 518083, China.
Siru ChenBGI Shenzhen, Shenzhen, 518083, China.
Huanming YangBGI Shenzhen, Shenzhen, 518083, China.
Meredith YeagerDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USA.
Michael DeanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USA.
Ryan E MillsDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.
Volodymyr SmolankaDepartment of Medicine, Uzhhorod National University, Uzhhorod 88000, Ukraine.

Funding

University of Michigan Training Program in Genomic ScienceT32HG000040 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sebastian Zoellner · 1995 to 2026
$16.4M
NHGRI NIH HHS T32 HG000040
6 · The paper itself

Abstract

backgroundThe main goal of this collaborative effort is to provide genome-wide data for the previously underrepresented population in Eastern Europe, and to provide cross-validation of the data from genome sequences and genotypes of the same individuals acquired by different technologies. We collected 97 genome-grade DNA samples from consented individuals representing major regions of Ukraine that were consented for public data release. BGISEQ-500 sequence data and genotypes by an Illumina GWAS chip were cross-validated on multiple samples and additionally referenced to 1 sample that has been resequenced by Illumina NovaSeq6000 S4 at high coverage.

resultsThe genome data have been searched for genomic variation represented in this population, and a number of variants have been reported: large structural variants, indels, copy number variations, single-nucletide polymorphisms, and microsatellites. To our knowledge, this study provides the largest to-date survey of genetic variation in Ukraine, creating a public reference resource aiming to provide data for medical research in a large understudied population.

conclusionsOur results indicate that the genetic diversity of the Ukrainian population is uniquely shaped by evolutionary and demographic forces and cannot be ignored in future genetic and biomedical studies. These data will contribute a wealth of new information bringing forth a wealth of novel, endemic and medically related alleles.

Indexed as

DNA Copy Number VariationsPolymorphism, Single NucleotideGenomeGenomicsHumansUkraineBGISEQ-500CNVDNBSEQgenomesgenotypingIlluminaindelsNGSSNPvariant calling

Identifiers

PMID33438729
PMCPMC7804371

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.