Evidence map›Paper›PMID 33436847›Full record

ArticleScientific reports2021

Expression and function of the cdgD gene, encoding a CHASE-PAS-DGC-EAL domain protein, in Azospirillum brasilense.

José Francisco Cruz-Pérez, Roxana Lara-Oueilhe, Cynthia Marcos-Jiménez, Ricardo Cuatlayotl-Olarte, María Luisa Xiqui-Vázquez, Sandra Raquel Reyes-Carmona, Beatriz Eugenia Baca, Alberto Ramírez-Mata

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Functional analysis of cyclic diguanylate-modulating proteins inbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. CdgC, a Cyclic-di-GMP Diguanylate Cyclase ofFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

José Francisco Cruz-PérezLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
Roxana Lara-OueilheLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
Cynthia Marcos-JiménezLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
Ricardo Cuatlayotl-OlarteLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
María Luisa Xiqui-VázquezLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
Sandra Raquel Reyes-CarmonaLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
Beatriz Eugenia BacaLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico.
Alberto Ramírez-MataLaboratorio de La Interacción Bacteria-Planta, Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Avenida San Claudio S/N, Puebla Pue, Mexico. alberto.ramirez@correo.buap.mx.
Benemérita Universidad Autónoma de Puebla · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant growth-promoting bacterium Azospirillum brasilense contains several genes encoding proteins involved in the biosynthesis and degradation of the second messenger cyclic-di-GMP, which may control key bacterial functions, such as biofilm formation and motility. Here, we analysed the function and expression of the cdgD gene, encoding a multidomain protein that includes GGDEF-EAL domains and CHASE and PAS domains. An insertional cdgD gene mutant was constructed, and analysis of biofilm and extracellular polymeric substance production, as well as the motility phenotype indicated that cdgD encoded a functional diguanylate protein. These results were correlated with a reduced overall cellular concentration of cyclic-di-GMP in the mutant over 48 h compared with that observed in the wild-type strain, which was recovered in the complemented strain. In addition, cdgD gene expression was measured in cells growing under planktonic or biofilm conditions, and differential expression was observed when KNO

Indexed as

Gene ExpressionAzospirillum brasilenseBacterial AdhesionBacterial ProteinsCyclic GMPGene Expression Regulation, BacterialHost Microbial InteractionsMutationPlant RootsProtein DomainsSecond Messenger SystemsTriticumBacterial ProteinsCyclic GMP

Identifiers

PMID33436847
PMCPMC7804937
OpenAlexW3120620556

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.