Evidence map›Paper›PMID 33436720›Full record

ArticleScientific reports2021

Genome wide methylation profiling of selected matched soft tissue sarcomas identifies methylation changes in metastatic and recurrent disease.

Ana Cristina Vargas, Lesley-Ann Gray, Christine L White, Fiona M Maclean, Peter Grimison, Nima Mesbah Ardakani, Fiona Bonar, Elizabeth M Algar, Alison L Cheah, Peter Russell and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Epigenetics of Cutaneous Sarcoma.International journal of molecular sciences · 2021
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Ana Cristina VargasDepartment of Anatomical Pathology, Douglass Hanly Moir Pathology, Macquarie Park, NSW, 2113, Australia. cvargas@dhm.com.au.
Lesley-Ann GrayAustralian Genome Research Facility Ltd, Victorian Comprehensive Cancer Centre, Melbourne, VIC, 3000, Australia.
Christine L WhiteGenetics and Molecular Pathology Laboratory, Centre for Cancer Research, Hudson Institute of Medical Research, Clayton, VIC, 3168, Australia.
Fiona M MacleanDepartment of Anatomical Pathology, Douglass Hanly Moir Pathology, Macquarie Park, NSW, 2113, Australia.
Peter GrimisonMedical School, University of Sydney, Sydney, NSW, 2006, Australia.
Nima Mesbah ArdakaniDepartment of Anatomical Pathology, PathWest Laboratory Medicine, QEII Medical Centre, Perth, WA, Australia.
Fiona BonarDepartment of Anatomical Pathology, Douglass Hanly Moir Pathology, Macquarie Park, NSW, 2113, Australia.
Elizabeth M AlgarGenetics and Molecular Pathology Laboratory, Centre for Cancer Research, Hudson Institute of Medical Research, Clayton, VIC, 3168, Australia.
Alison L CheahDepartment of Anatomical Pathology, Douglass Hanly Moir Pathology, Macquarie Park, NSW, 2113, Australia.
Peter RussellMedical School, University of Sydney, Sydney, NSW, 2006, Australia.
Annabelle MaharDepartment of Tissue Pathology and Diagnostic Oncology, Royal Prince Alfred Hospital, Camperdown, NSW, 2050, Australia.
Anthony J GillCancer Diagnosis and Pathology Group, Kolling Institute of Medical Research, Royal North Shore Hospital, St Leonards, NSW, 2065, Australia.
Douglass Hanly Moir Pathology · AUUniversity of Sydney · AUHudson Institute of Medical Research · AUQueen Elizabeth II Medical Centre · AURoyal Prince Alfred Hospital · AUVictorian Comprehensive Cancer Centre · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study we used the Illumina Infinium Methylation array to investigate in a cohort of matched archival human tissue samples (n = 32) from 14 individuals with soft tissue sarcomas if genome-wide methylation changes occur during metastatic and recurrent (Met/Rec) disease. A range of sarcoma types were selected for this study: leiomyosarcoma (LMS), myxofibrosarcoma (MFS), rhabdomyosarcoma (RMS) and synovial sarcoma (SS). We identified differential methylation in all Met/Rec matched samples, demonstrating that epigenomic differences develop during the clonal evolution of sarcomas. Differentially methylated regions and genes were detected, not been previously implicated in sarcoma progression, including at PTPRN2 and DAXX in LMS, WT1-AS and TNXB in SS, VENTX and NTRK3 in pleomorphic RMS and MEST and the C14MC / miR-379/miR-656 in MFS. Our overall findings indicate the presence of objective epigenetic differences across primary and Met/Rec human tissue samples not previously reported.

Indexed as

DNA MethylationEpigenesis, GeneticGene Expression Regulation, NeoplasticAdultAgedBiomarkers, TumorFemaleGene Expression ProfilingHumansMaleMiddle AgedNeoplasm MetastasisNeoplasm Recurrence, LocalPrognosisSarcomaBiomarkers, Tumor

Identifiers

PMID33436720
PMCPMC7804318
OpenAlexW3120526673

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.