Evidence map›Paper›PMID 33436623›Full record

ArticleNature communications2021

Structural basis for the multi-activity factor Rad5 in replication stress tolerance.

Miaomiao Shen, Nalini Dhingra, Quan Wang, Chen Cheng, Songbiao Zhu, Xiaolin Tian, Jun Yu, Xiaoxin Gong, Xuzhichao Li, Hongwei Zhang and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Miaomiao ShenDepartment of Biochemistry and Molecular Biology, Tianjin Medical University, 300070, Tianjin, P. R. China.ORCID 0000-0001-6729-3854
Nalini DhingraMolecular Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Quan WangDepartment of Molecular and Cellular Biochemistry, Indiana University Bloomington, Bloomington, IN, 47405, USA.ORCID 0000-0001-9199-0190
Chen ChengState Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 201210, Shanghai, P. R. China.
Songbiao ZhuMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, 100084, Beijing, P. R. China.
Xiaolin TianMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, 100084, Beijing, P. R. China.
Jun YuCAS Key Laboratory of Nutrition, Metabolism and Food safety, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031, Shanghai, P. R. China.
Xiaoxin GongDepartment of Biochemistry and Molecular Biology, Tianjin Medical University, 300070, Tianjin, P. R. China.
Xuzhichao LiDepartment of Biochemistry and Molecular Biology, Tianjin Medical University, 300070, Tianjin, P. R. China.
Hongwei ZhangCAS Key Laboratory of Nutrition, Metabolism and Food safety, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031, Shanghai, P. R. China.
Xin XuDepartment of Biochemistry and Molecular Biology, Tianjin Medical University, 300070, Tianjin, P. R. China.ORCID 0000-0002-8840-4813
Liting ZhaiCAS Key Laboratory of Nutrition, Metabolism and Food safety, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031, Shanghai, P. R. China.
Min XieCAS Key Laboratory of Nutrition, Metabolism and Food safety, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031, Shanghai, P. R. China.
Ying GaoCAS Key Laboratory of Nutrition, Metabolism and Food safety, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031, Shanghai, P. R. China.
Haiteng DengMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, 100084, Beijing, P. R. China.
Yongning HeState Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 201210, Shanghai, P. R. China.
Hengyao NiuDepartment of Molecular and Cellular Biochemistry, Indiana University Bloomington, Bloomington, IN, 47405, USA.
Xiaolan ZhaoMolecular Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-8302-6905
Song XiangDepartment of Biochemistry and Molecular Biology, Tianjin Medical University, 300070, Tianjin, P. R. China. xiangsong@tmu.edu.cn.ORCID 0000-0001-9314-4684
Shanghai Institute of Nutrition and Health · CNTianjin Medical University · CNTsinghua University · CNChinese Academy of Sciences · CNIndiana University Bloomington · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
The Rtt107 interactome structures and functionsR01GM080670 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI ZHAO, XIAOLAN · 2007 to 2021
$4.5M
Regulation of Replication and Recombination IntermediatesR01GM131058 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI ZHAO, XIAOLAN · 2019 to 2022
$1.6M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM080670NIGMS NIH HHS R01 GM131058
6 · The paper itself

Abstract

The yeast protein Rad5 and its orthologs in other eukaryotes promote replication stress tolerance and cell survival using their multiple activities, including ubiquitin ligase, replication fork remodeling and DNA lesion targeting activities. Here, we present the crystal structure of a nearly full-length Rad5 protein. The structure shows three distinct, but well-connected, domains required for Rad5's activities. The spatial arrangement of these domains suggest that different domains can have autonomous activities but also undergo intrinsic coordination. Moreover, our structural, biochemical and cellular studies demonstrate that Rad5's HIRAN domain mediates interactions with the DNA metabolism maestro factor PCNA and contributes to its poly-ubiquitination, binds to DNA and contributes to the Rad5-catalyzed replication fork regression, defining a new type of HIRAN domains with multiple activities. Our work provides a framework to understand how Rad5 integrates its various activities in replication stress tolerance.

Indexed as

Adaptation, PhysiologicalStress, PhysiologicalBiocatalysisConserved SequenceDNAFungal ProteinsKluyveromycesProliferating Cell Nuclear AntigenProtein BindingProtein DomainsSaccharomyces cerevisiaeUbiquitinDNAFungal ProteinsProliferating Cell Nuclear AntigenUbiquitin

Identifiers

PMID33436623
PMCPMC7804152
OpenAlexW3121017310

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.