Evidence map›Paper›PMID 33436497›Full record

ReviewScience signaling2021

Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications.

Bálint Mészáros, Hugo Sámano-Sánchez, Jesús Alvarado-Valverde, Jelena Čalyševa, Elizabeth Martínez-Pérez, Renato Alves, Denis C Shields, Manjeet Kumar, Friedrich Rippmann, Lucía B Chemes and 1 more

Open access · bronzeAbstract readReview
In one paragraph

Review in Science signaling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  4. Predicting Motif-Mediated Interactions Based on Viral Genomic Composition.International journal of molecular sciences · 2025
    Article
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  16. Autophagy and SARS-CoV-2-Old Players in New Games.International journal of molecular sciences · 2023
    Review
  17. Autophagy in Inflammatory Response against SARS-CoV-2.International journal of molecular sciences · 2023
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Bálint MészárosStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany. balint.meszaros@embl.de manjeet.kumar@embl.de lchemes@iib.unsam.edu.ar toby.gibson@embl.de.ORCID 0000-0003-0919-4449
Hugo Sámano-SánchezStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0003-4744-4787
Jesús Alvarado-ValverdeStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0003-0752-1151
Jelena ČalyševaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Elizabeth Martínez-PérezStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0003-4411-976X
Renato AlvesStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0002-7212-0234
Denis C ShieldsSchool of Medicine, University College Dublin, Dublin 4, Ireland.ORCID 0000-0003-4015-2474
Manjeet KumarStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany. balint.meszaros@embl.de manjeet.kumar@embl.de lchemes@iib.unsam.edu.ar toby.gibson@embl.de.ORCID 0000-0002-3004-2151
Friedrich RippmannComputational Chemistry & Biology, Merck KGaA, Frankfurter Str. 250, 64293 Darmstadt, Germany.ORCID 0000-0002-4604-9251
Lucía B ChemesInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde", IIB-UNSAM, IIBIO-CONICET, Universidad Nacional de San Martín, CP1650 San Martín, Buenos Aires, Argentina. balint.meszaros@embl.de manjeet.kumar@embl.de lchemes@iib.unsam.edu.ar toby.gibson@embl.de.ORCID 0000-0003-0192-9906
Toby J GibsonStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany. balint.meszaros@embl.de manjeet.kumar@embl.de lchemes@iib.unsam.edu.ar toby.gibson@embl.de.ORCID 0000-0003-0657-5166
European Molecular Biology Laboratory · DEHeidelberg University · DEFundación Instituto Leloir · ARMerck (Germany) · DENational University of General San Martín · ARUniversity College Dublin · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The first reported receptor for SARS-CoV-2 on host cells was the angiotensin-converting enzyme 2 (ACE2). However, the viral spike protein also has an RGD motif, suggesting that cell surface integrins may be co-receptors. We examined the sequences of ACE2 and integrins with the Eukaryotic Linear Motif (ELM) resource and identified candidate short linear motifs (SLiMs) in their short, unstructured, cytosolic tails with potential roles in endocytosis, membrane dynamics, autophagy, cytoskeleton, and cell signaling. These SLiM candidates are highly conserved in vertebrates and may interact with the μ2 subunit of the endocytosis-associated AP2 adaptor complex, as well as with various protein domains (namely, I-BAR, LC3, PDZ, PTB, and SH2) found in human signaling and regulatory proteins. Several motifs overlap in the tail sequences, suggesting that they may act as molecular switches, such as in response to tyrosine phosphorylation status. Candidate LC3-interacting region (LIR) motifs are present in the tails of integrin β

Indexed as

Virus InternalizationAmino Acid SequenceAngiotensin-Converting Enzyme 2AnimalsConserved SequenceCOVID-19Host Microbial InteractionsHumansIntegrinsIntrinsically Disordered ProteinsModels, BiologicalModels, MolecularOligopeptidesProtein Interaction Domains and MotifsProtein Sorting SignalsReceptors, VirusACE2 protein, humanAngiotensin-Converting Enzyme 2arginyl-glycyl-aspartic acidIntegrinsIntrinsically Disordered ProteinsOligopeptidesProtein Sorting SignalsReceptors, VirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID33436497
PMCPMC7928535
OpenAlexW3017559857

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.