Evidence map›Paper›PMID 33436076›Full record

ArticleMobile DNA2021

The Dfam community resource of transposable element families, sequence models, and genome annotations.

Jessica Storer, Robert Hubley, Jeb Rosen, Travis J Wheeler, Arian F Smit

Abstract read
In one paragraph

Article in Mobile DNA, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 517 papers.

0numbers the graph read from it
0cells of the map it votes in
517citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

517 citing papers in PubMed.

  1. Near-complete genomes for nine haplochromine cichlid fishes reveal a novel centromeric satellite structure organised around a pair of inverted elements.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
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  6. Machine learning reveals sequence and genomic context features underlyingbioRxiv : the preprint server for biology · 2026
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457 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jessica StorerInstitute for Systems Biology, Seattle, WA, 98109, USA. jessica.storer@isbscience.org.
Robert HubleyInstitute for Systems Biology, Seattle, WA, 98109, USA. robert.hubley@isbscience.org.ORCID http://orcid.org/0000-0001-9261-3821
Jeb RosenInstitute for Systems Biology, Seattle, WA, 98109, USA.
Travis J WheelerUniversity of Montana, Missoula, MT, 59812, USA.
Arian F SmitInstitute for Systems Biology, Seattle, WA, 98109, USA. asmit@systemsbiology.org.

Funding

Maintenance and Development of RepeatMasker and RepeatModelerR01HG002939 · NHGRI · INSTITUTE FOR SYSTEMS BIOLOGY · PI Robert MacDonald Hubley, Arian Fredericus Anthonius Smit · 2003 to 2026
$9.1M
Dfam: sustainable growth, curation support, and improved quality for mobile element annotationU24HG010136 · NHGRI · INSTITUTE FOR SYSTEMS BIOLOGY · PI Robert MacDonald Hubley, Arian Fredericus Anthonius Smit · 2018 to 2026
$5.2M
NHGRI NIH HHS HG002939NHGRI NIH HHS HG010136NHGRI NIH HHS R01 HG002939NHGRI NIH HHS U24 HG010136
6 · The paper itself

Abstract

Dfam is an open access database of repetitive DNA families, sequence models, and genome annotations. The 3.0-3.3 releases of Dfam ( https://dfam.org ) represent an evolution from a proof-of-principle collection of transposable element families in model organisms into a community resource for a broad range of species, and for both curated and uncurated datasets. In addition, releases since Dfam 3.0 provide auxiliary consensus sequence models, transposable element protein alignments, and a formalized classification system to support the growing diversity of organisms represented in the resource. The latest release includes 266,740 new de novo generated transposable element families from 336 species contributed by the EBI. This expansion demonstrates the utility of many of Dfam's new features and provides insight into the long term challenges ahead for improving de novo generated transposable element datasets.

Identifiers

PMID33436076
PMCPMC7805219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.