Evidence map›Paper›PMID 33436051›Full record

ArticleCell & bioscience2021

Comparative transcriptome analysis revealed differential gene expression in multiple signaling pathways at flowering in polyploid Brassica rapa.

Janeen Braynen, Yan Yang, Jiachen Yuan, Zhengqing Xie, Gangqiang Cao, Xiaochun Wei, Gongyao Shi, Xiaowei Zhang, Fang Wei, Baoming Tian

Abstract read
In one paragraph

Article in Cell & bioscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Janeen BraynenSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.ORCID http://orcid.org/0000-0002-0670-2148
Yan YangSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.
Jiachen YuanSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.
Zhengqing XieHenan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.
Gangqiang CaoHenan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.
Xiaochun WeiInstitute of Horticultural Research, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, Henan, China.
Gongyao ShiSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China.
Xiaowei ZhangInstitute of Horticultural Research, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, Henan, China.
Fang WeiSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China. fangwei@zzu.edu.cn.
Baoming TianHenan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, 450001, Henan, China. tianbm@zzu.edu.cn.

Funding

National Natural Science Foundation of China 31600995Science and Technology Innovation Talents in Universities of Henan Province 19HASTIT014
6 · The paper itself

Abstract

backgroundPolyploidy is widespread in angiosperms and has a significant impact on plant evolution, diversity, and breeding program. However, the changes in the flower development regulatory mechanism in autotetraploid plants remains relatively limited. In this study, RNA-seq analysis was used to investigate changes in signaling pathways at flowering in autotetraploid Brassica rapa.

resultsThe study findings showed that the key genes such as CO, CRY2, and FT which promotes floral formation were down-regulated, whereas floral transition genes FPF1 and FD were up-regulated in autotetraploid B. rapa. The data also demonstrated that the positive regulators GA1 and ELA1 in the gibberellin's biosynthesis pathway were negatively regulated by polyploidy in B. rapa. Furthermore, transcriptional factors (TFs) associated with flower development were significantly differentially expressed including the up-regulated CIB1 and AGL18, and the down-regulated AGL15 genes, and by working together such genes affected the expression of the down-stream flowering regulator FLOWERING LOCUS T in polyploid B. rapa. Compared with that in diploids autotetrapoid plants consist of differential expression within the signaling transduction pathway, with 13 TIFY gens up-regulated and 17 genes related to auxin pathway down-regulated.

conclusionTherefore, polyploidy is more likely to integrate multiple signaling pathways to influence flowering in B. rapa after polyploidization. In general, the present results shed new light on our global understanding of flowering regulation in polyploid plants during breeding program.

Indexed as

Brassica rapaFloweringPolyploidyRegulatory pathwayTranscriptional factorsTranscriptome

Identifiers

PMID33436051
PMCPMC7802129

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.