Evidence map›Paper›PMID 33434786›Full record

ArticleBioelectrochemistry (Amsterdam, Netherlands)2021

A statistical framework for determination of minimal plasmid copy number required for transgene expression in mammalian cells.

Liangli Wang, Chun-Chi Chang, Justin Sylvers, Fan Yuan

Open access · greenAbstract read
In one paragraph

Article in Bioelectrochemistry (Amsterdam, Netherlands), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Nanoenhancer for improving naked DNA electrotransfectionFrontiers in bioengineering and biotechnology · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Liangli WangDepartment of Biomedical Engineering, Duke University, Durham, NC 27708, USA.
Chun-Chi ChangDepartment of Biomedical Engineering, Duke University, Durham, NC 27708, USA.
Justin SylversDepartment of Biomedical Engineering, Duke University, Durham, NC 27708, USA.
Fan YuanDepartment of Biomedical Engineering, Duke University, Durham, NC 27708, USA. Electronic address: fyuan@duke.edu.
Duke University · US

Funding

Non-Canonical Pathways for Electrogene TransferR01GM130830 · NIGMS · DUKE UNIVERSITY · PI YUAN, FAN · 2018 to 2021
$1.2M
NIGMS NIH HHS R01 GM130830
6 · The paper itself

Abstract

Plasmid DNA (pDNA) has been widely used for non-viral gene delivery. After pDNA molecules enter a mammalian cell, they may be trapped in subcellular structures or degraded by nucleases. Only a fraction of them can function as templates for transcription in the nucleus. Thus, an important question is, what is the minimal amount of pDNA molecules that need to be delivered into a cell for transgene expression? At present, it is technically a challenge to experimentally answer the question. To this end, we developed a statistical framework to establish the relationship between two experimentally quantifiable factors - average copy number of pDNA per cell among a group of cells after transfection and percent of the cells with transgene expression. The framework was applied to the analysis of electrotransfection under different experimental conditions in vitro. We experimentally varied the average copy number per cell and the electrotransfection efficiency through changes in extracellular pDNA dose, electric field strength, and pulse number. The experimental data could be explained or predicted quantitatively by the statistical framework. Based on the data and the framework, we could predict that the minimal number of pDNA molecules in the nucleus for transgene expression was on the order of 10. Although the prediction was dependent on the cell and experimental conditions used in the study, the framework may be generally applied to analysis of non-viral gene delivery.

Indexed as

Cell LineDNA Copy Number VariationsGene DosageGene ExpressionHumansPlasmidsTransfectionTransgenesCopy number of DNAElectroporationElectrotransfectionMathematical modelingNon-viral gene delivery

Identifiers

PMID33434786
PMCPMC7887061
OpenAlexW3115427119

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.