Evidence map›Paper›PMID 33432777›Full record

ReviewMolecular ecology2021

Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis.

Paula Arribas, Carmelo Andújar, Martin I Bidartondo, Kristine Bohmann, Éric Coissac, Simon Creer, Jeremy R deWaard, Vasco Elbrecht, Gentile F Ficetola, Marta Goberna and 15 more

Abstract readReview
In one paragraph

Review in Molecular ecology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Paula ArribasIsland Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de la Laguna, Spain.ORCID 0000-0002-0358-8271
Carmelo AndújarIsland Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de la Laguna, Spain.ORCID 0000-0001-9759-7402
Martin I BidartondoDepartment of Life Sciences, Imperial College London, London, UK.
Kristine BohmannSection for Evolutionary Genomics, Faculty of Health and Medical Sciences, Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Éric CoissacUniversité Grenoble Alpes, CNRS, Université Savoie Mont Blanc, LECA, Laboratoire d'Ecologie Alpine, Grenoble, France.
Simon CreerSchool of Natural Sciences, Bangor University, Gwynedd, UK.
Jeremy R deWaardCentre for Biodiversity Genomics, University of Guelph, Guelph, Canada.ORCID 0000-0001-9778-5454
Vasco ElbrechtCentre for Biodiversity Monitoring (ZBM), Zoological Research Museum Alexander Koenig, Bonn, Germany.ORCID 0000-0003-4672-7099
Gentile F FicetolaUniversité Grenoble Alpes, CNRS, Université Savoie Mont Blanc, LECA, Laboratoire d'Ecologie Alpine, Grenoble, France.ORCID 0000-0003-3414-5155
Marta GobernaDepartment of Environment and Agronomy, INIA, Madrid, Spain.ORCID 0000-0001-5303-3429
Susan KennedyBiodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Onna-son, Japan.ORCID 0000-0002-1616-3985
Henrik KrehenwinkelDepartment of Biogeography, Trier University, Trier, Germany.ORCID 0000-0001-5069-8601
Florian LeeseAquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID 0000-0002-5465-913X
Vojtech NovotnyBiology Centre, Institute of Entomology, Czech Academy of Sciences, Ceske Budejovice, Czech Republic.
Fredrik RonquistDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.
Douglas W YuState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Lucie ZingerInstitut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, Paris, France.ORCID 0000-0002-3400-5825
Thomas J CreedyDepartment of Life Sciences, Natural History Museum, London, UK.
Emmanouil MeramveliotakisDepartment of Biological Sciences, University of Cyprus, Nicosia, Cyprus.
Víctor NogueralesDepartment of Biological Sciences, University of Cyprus, Nicosia, Cyprus.
Isaac OvercastInstitut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, Paris, France.
Hélène MorlonInstitut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, Paris, France.
Alfried P VoglerDepartment of Life Sciences, Imperial College London, London, UK.ORCID 0000-0002-2462-3718
Anna PapadopoulouDepartment of Biological Sciences, University of Cyprus, Nicosia, Cyprus.
Brent C EmersonIsland Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), San Cristóbal de la Laguna, Spain.ORCID 0000-0003-4067-9858

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput sequencing (HTS) is increasingly being used for the characterization and monitoring of biodiversity. If applied in a structured way, across broad geographical scales, it offers the potential for a much deeper understanding of global biodiversity through the integration of massive quantities of molecular inventory data generated independently at local, regional and global scales. The universality, reliability and efficiency of HTS data can potentially facilitate the seamless linking of data among species assemblages from different sites, at different hierarchical levels of diversity, for any taxonomic group and regardless of prior taxonomic knowledge. However, collective international efforts are required to optimally exploit the potential of site-based HTS data for global integration and synthesis, efforts that at present are limited to the microbial domain. To contribute to the development of an analogous strategy for the nonmicrobial terrestrial domain, an international symposium entitled "Next Generation Biodiversity Monitoring" was held in November 2019 in Nicosia (Cyprus). The symposium brought together evolutionary geneticists, ecologists and biodiversity scientists involved in diverse regional and global initiatives using HTS as a core tool for biodiversity assessment. In this review, we summarize the consensus that emerged from the 3-day symposium. We converged on the opinion that an effective terrestrial Genomic Observatories network for global biodiversity integration and synthesis should be spatially led and strategically united under the umbrella of the metabarcoding approach. Subsequently, we outline an HTS-based strategy to collectively build an integrative framework for site-based biodiversity data generation.

Indexed as

BiodiversityDNA Barcoding, TaxonomicCyprusGenomicsReproducibility of Resultsbiodiversity assessmentDNA metabarcodingGenomic Observatoriesharmonized data generationhigh-throughput sequencing

Identifiers

PMID33432777
PMCPMC7986105

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.