Evidence map›Paper›PMID 33432714›Full record

ArticleMolecular ecology2021

Population genomics in the arboviral vector Aedes aegypti reveals the genomic architecture and evolution of endogenous viral elements.

Cristina M Crava, Finny S Varghese, Elisa Pischedda, Rebecca Halbach, Umberto Palatini, Michele Marconcini, Leila Gasmi, Seth Redmond, Yaw Afrane, Diego Ayala and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular ecology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 64 citations in OpenAlex.

  1. Vector competence acrossJournal of virology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 6 countries.

Cristina M CravaDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID 0000-0003-3774-4567
Finny S VargheseDepartment of Medical Microbiology, Radboud University Medical Center, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Elisa PischeddaDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Rebecca HalbachDepartment of Medical Microbiology, Radboud University Medical Center, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Umberto PalatiniDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Michele MarconciniDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Leila GasmiDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Seth RedmondInstitute of Vector Borne Disease, Monash University, Australia.
Yaw AfraneDepartment of Medical Microbiology, University of Ghana, Accra, Ghana.
Diego AyalaMIVEGEC, Univ. Montpellier, IRD, CNRS, Montpellier, France.ORCID 0000-0003-4726-580X
Christophe PaupyMIVEGEC, Univ. Montpellier, IRD, CNRS, Montpellier, France.
Rebeca Carballar-LejarazuDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Pascal MiesenDepartment of Medical Microbiology, Radboud University Medical Center, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Ronald P van RijDepartment of Medical Microbiology, Radboud University Medical Center, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Mariangela BonizzoniDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID 0000-0003-0568-8564
University of Pavia · ITRadboud University Nijmegen · NLCentre National de la Recherche Scientifique · FRUniversity of Ghana · GHVector & Vector-Borne Diseases Research Institute · TZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horizontal gene transfer from viruses to eukaryotic cells is a pervasive phenomenon. Somatic viral integrations are linked to persistent viral infection whereas integrations into germline cells are maintained in host genomes by vertical transmission and may be co-opted for host functions. In the arboviral vector Aedes aegypti, an endogenous viral element from a nonretroviral RNA virus (nrEVE) was shown to produce PIWI-interacting RNAs (piRNAs) to limit infection with a cognate virus. Thus, nrEVEs may constitute a heritable, sequence-specific mechanism for antiviral immunity, analogous to piRNA-mediated silencing of transposable elements. Here, we combine population genomics and evolutionary approaches to analyse the genomic architecture of nrEVEs in A. aegypti. We conducted a genome-wide screen for adaptive nrEVEs and searched for novel population-specific nrEVEs in the genomes of 80 individual wild-caught mosquitoes from five geographical populations. We show a dynamic landscape of nrEVEs in mosquito genomes and identified five novel nrEVEs derived from two currently circulating viruses, providing evidence of the environmental-dependent modification of a piRNA cluster. Overall, our results show that virus endogenization events are complex with only a few nrEVEs contributing to adaptive evolution in A. aegypti.

Indexed as

AedesAnimalsGenomicsMetagenomicsMosquito VectorsRNA, Small InterferingRNA, Small InterferingAedes aegyptiendogenous viral elementsmosquito genomespiRNA cluster

Identifiers

PMID33432714
PMCPMC8048955
OpenAlexW3120080346

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.