Evidence map›Paper›PMID 33432236›Full record

ArticleNature chemical biology2021

Robust direct digital-to-biological data storage in living cells.

Sung Sun Yim, Ross M McBee, Alan M Song, Yiming Huang, Ravi U Sheth, Harris H Wang

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Electrochemistry as a Tool for Redox-Based Bio-Information Processing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  7. Review
  8. Article
  9. DNA storage: The future direction for medical cold data storage.Synthetic and systems biotechnology · 2025
    Review
  10. Article
  11. Article
  12. Toward DNA-Based Recording of Biological Processes.International journal of molecular sciences · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. "Cell Disk" DNA Storage System Capable of Random Reading and Rewriting.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  17. Review
  18. Article
  19. Article
  20. Assessing spacer acquisition rates inFrontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sung Sun YimDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-5060-0344
Ross M McBeeDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-1926-2863
Alan M SongDepartment of Systems Biology, Columbia University, New York, NY, USA.
Yiming HuangDepartment of Systems Biology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-1932-2803
Ravi U ShethDepartment of Systems Biology, Columbia University, New York, NY, USA.
Harris H WangDepartment of Systems Biology, Columbia University, New York, NY, USA. hw2429@columbia.edu.ORCID http://orcid.org/0000-0003-2164-4318
Columbia University · US

Funding

Micron-scale Spatial Metagenomic Mapping of Microbial Biogeography in the Gastrointestinal TractR01AI132403 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Harris H Wang · 2017 to 2026
$6.0M
NIAID NIH HHS R01 AI132403
6 · The paper itself

Abstract

DNA has been the predominant information storage medium for biology and holds great promise as a next-generation high-density data medium in the digital era. Currently, the vast majority of DNA-based data storage approaches rely on in vitro DNA synthesis. As such, there are limited methods to encode digital data into the chromosomes of living cells in a single step. Here, we describe a new electrogenetic framework for direct storage of digital data in living cells. Using an engineered redox-responsive CRISPR adaptation system, we encoded binary data in 3-bit units into CRISPR arrays of bacterial cells by electrical stimulation. We demonstrate multiplex data encoding into barcoded cell populations to yield meaningful information storage and capacity up to 72 bits, which can be maintained over many generations in natural open environments. This work establishes a direct digital-to-biological data storage framework and advances our capacity for information exchange between silicon- and carbon-based entities.

Indexed as

Electrochemical TechniquesElectronsBase SequenceCarbonCell EngineeringCRISPR-Cas SystemsDNAElectricityEscherichia coliFerrocyanidesHumansInformation Storage and RetrievalOligonucleotide Array Sequence AnalysisOxidation-ReductionSequence Analysis, DNASiliconCarbonDNAFerrocyanideshexacyanoferrate IISilicon

Identifiers

PMID33432236
PMCPMC7904632
OpenAlexW3121009300

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.