Evidence map›Paper›PMID 33431984›Full record

ArticleScientific reports2021

Surface hydrophobics mediate functional dimerization of CYP121A1 of Mycobacterium tuberculosis.

Amit Kumar, Christopher S Campomizzi, Natalie Jay, Shaun Ferguson, Emelie-Jo Scheffler, James Lioi, Chengjian Tu, Jun Qu, Claire Simons, D Fernando Estrada

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Characterization of a CYP107 family vitamin DArchives of biochemistry and biophysics · 2026
    Article
  2. Article
  3. Recent Characterization of Key Proteins to Combat Tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Amit KumarDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA.
Christopher S CampomizziDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA.
Natalie JayDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA.
Shaun FergusonDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA.
Emelie-Jo SchefflerDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA.
James LioiDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA.
Chengjian TuDepartment of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, Buffalo, NY, 14214, USA.
Jun QuDepartment of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, Buffalo, NY, 14214, USA.
Claire SimonsSchool of Pharmacy and Pharmaceutical Sciences, Cardiff University, King Edward VII Avenue, Cardiff, CF10 3NB, UK.
D Fernando EstradaDepartment of Biochemistry, Jacobs School of Medicine and Biomedical Science, University at Buffalo, Buffalo, NY, 14203, USA. dfestrad@buffalo.edu.
University at Buffalo, State University of New York · USCardiff University · GB

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
NCATS NIH HHS UL1 TR001412
6 · The paper itself

Abstract

Tuberculosis is caused by the pathogenic bacterium Mycobacterium tuberculosis (Mtb) and remains the leading cause of death by infection world-wide. The Mtb genome encodes a disproportionate number of twenty cytochrome P450 enzymes, of which the essential enzyme cytochrome P450 121A1 (CYP121A1) remains a target of drug design efforts. CYP121A1 mediates a phenol coupling reaction of the tyrosine dipeptide cyclo-L-Tyr-L-Tyr (cYY). In this work, a structure and function investigation of dimerization was performed as an overlooked feature of CYP121A1 function. This investigation showed that CYP121A1 dimers form via intermolecular contacts on the distal surface and are mediated by a network of solvent-exposed hydrophobic residues. Disruption of CYP121A1 dimers by site-directed mutagenesis leads to a partial loss of specificity for cYY, resulting in an approximate 75% decrease in catalysis.

Indexed as

Protein MultimerizationCytochrome P-450 Enzyme SystemHydrophobic and Hydrophilic InteractionsMycobacterium tuberculosisProtein BindingSurface Propertiescytochrome P-450 CYP121Cytochrome P-450 Enzyme System

Identifiers

PMID33431984
PMCPMC7801616
OpenAlexW3118887072

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.