Evidence map›Paper›PMID 33431688›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Structure and activation mechanism of the yeast RNA Pol II CTD kinase CTDK-1 complex.

Yihu Xie, Christopher L Lord, Bradley P Clarke, Austin L Ivey, Pate S Hill, W Hayes McDonald, Susan R Wente, Yi Ren

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Structures and mRNP remodeling mechanism of the TREX-2 complex.Structure (London, England : 1993) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yihu XieDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232.
Christopher L LordDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.
Bradley P ClarkeDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232.ORCID 0000-0002-9413-9905
Austin L IveyDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232.ORCID 0000-0001-8077-0213
Pate S HillDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232.ORCID 0000-0001-9550-2713
W Hayes McDonaldDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232.
Susan R WenteDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN 37232.
Yi RenDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232; yi.ren@vanderbilt.edu.ORCID 0000-0003-4531-0910

Funding

Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
Molecular Analysis of Nuclear Pore Complex FunctionR37GM051219 · NIGMS · VANDERBILT UNIVERSITY · PI WENTE, SUSAN R. · 2010 to 2019
$5.6M
Mechanisms and Regulation of Nuclear mRNA ExportR35GM133743 · NIGMS · VANDERBILT UNIVERSITY · PI Yi Ren · 2019 to 2026
$3.6M
NCI NIH HHS T32 CA119925NIGMS NIH HHS R35 GM133743NIGMS NIH HHS R37 GM051219
6 · The paper itself

Abstract

The C-terminal domain (CTD) kinase I (CTDK-1) complex is the primary RNA Polymerase II (Pol II) CTD Ser2 kinase in budding yeast. CTDK-1 consists of a cyclin-dependent kinase (CDK) Ctk1, a cyclin Ctk2, and a unique subunit Ctk3 required for CTDK-1 activity. Here, we present a crystal structure of CTDK-1 at 1.85-Å resolution. The structure reveals that, compared to the canonical two-component CDK-cyclin system, the third component Ctk3 of CTDK-1 plays a critical role in Ctk1 activation by stabilizing a key element of CDK regulation, the T-loop, in an active conformation. In addition, Ctk3 contributes to the assembly of CTDK-1 through extensive interactions with both Ctk1 and Ctk2. We also demonstrate that CTDK-1 physically and genetically interacts with the serine/arginine-like protein Gbp2. Together, the data in our work reveal a regulatory mechanism of CDK complexes.

Indexed as

Transcription, GeneticAmino Acid SequenceCell NucleusCrystallography, X-RayCyclin-Dependent KinasesCyclinsMultiprotein ComplexesPhosphorylationProtein ConformationProtein KinasesRNA-Binding ProteinsRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCTDK-I protein complex, S cerevisiaeCyclin-Dependent KinasesCyclinsGbp2 protein, S cerevisiaeMultiprotein ComplexesProtein KinasesRNA-Binding ProteinsRNA Polymerase IISaccharomyces cerevisiae Proteinscyclin-dependent kinasemRNA processingtranscriptionX-ray crystallography

Identifiers

PMID33431688
PMCPMC7826397

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.