Evidence map›Paper›PMID 33431005›Full record

ArticleJournal of cheminformatics2020

CompRet: a comprehensive recommendation framework for chemical synthesis planning with algorithmic enumeration.

Ryosuke Shibukawa, Shoichi Ishida, Kazuki Yoshizoe, Kunihiro Wasa, Kiyosei Takasu, Yasushi Okuno, Kei Terayama, Koji Tsuda

Open access · goldAbstract read
In one paragraph

Article in Journal of cheminformatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Algorithm for the Pruning of Synthesis Graphs.Journal of chemical information and modeling · 2022
    Article
  9. AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge.Journal of chemical information and modeling · 2022
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Ryosuke ShibukawaGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.ORCID https://orcid.org/0000-0003-1173-3157
Shoichi IshidaGraduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, 606-8501, Kyoto, Japan.ORCID https://orcid.org/0000-0002-5638-3579
Kazuki YoshizoeRIKEN Center for Advanced Intelligence Project, Tokyo, Japan.
Kunihiro WasaToyohashi University of Technology, Aichi, Japan.
Kiyosei TakasuGraduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, 606-8501, Kyoto, Japan.ORCID https://orcid.org/0000-0002-1798-7919
Yasushi OkunoGraduate School of Medicine, Kyoto University, Kyoto, Japan.ORCID https://orcid.org/0000-0003-3596-4208
Kei TerayamaRIKEN Center for Advanced Intelligence Project, Tokyo, Japan. terayama@yokohama-cu.ac.jp.ORCID http://orcid.org/0000-0003-3914-248X
Koji TsudaGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan. tsuda@k.u-tokyo.ac.jp.ORCID https://orcid.org/0000-0002-4288-1606
Kyoto University · JPRIKEN Center for Advanced Intelligence Project · JPThe University of Tokyo · JPToyohashi University of Technology · JPTsuda University · JP

Funding

Core Research for Evolutional Science and Technology JPMJCR1502Exploratory Research for Advanced Technology JPMJER1903New Energy and Industrial Technology Development Organization P15009
6 · The paper itself

Abstract

In computer-assisted synthesis planning (CASP) programs, providing as many chemical synthetic routes as possible is essential for considering optimal and alternative routes in a chemical reaction network. As the majority of CASP programs have been designed to provide one or a few optimal routes, it is likely that the desired one will not be included. To avoid this, an exact algorithm that lists possible synthetic routes within the chemical reaction network is required, alongside a recommendation of synthetic routes that meet specified criteria based on the chemist's objectives. Herein, we propose a chemical-reaction-network-based synthetic route recommendation framework called "CompRet" with a mathematically guaranteed enumeration algorithm. In a preliminary experiment, CompRet was shown to successfully provide alternative routes for a known antihistaminic drug, cetirizine. CompRet is expected to promote desirable enumeration-based chemical synthesis searches and aid the development of an interactive CASP framework for chemists.

Indexed as

Computer-assisted synthesis planningEnumerationRetosynthesis

Identifiers

PMID33431005
PMCPMC7465358
OpenAlexW3082712976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.