Evidence map›Paper›PMID 33430782›Full record

ArticleBMC microbiology2021

Development of a real-time quantitative PCR method for detection and quantification of Prevotella copri.

Phebe Verbrugghe, Olivier Van Aken, Frida Hållenius, Anne Nilsson

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Phebe VerbruggheFood Technology, Engineering and Nutrition, Lund University, PO Box 124, 221 00, Lund, Sweden. vphebe4@yahoo.com.ORCID 0000-0002-9773-1015
Olivier Van AkenDepartment of Biology, Lund University, Lund University Plant Sciences, Sölvegatan 35, 223 62, Lund, Sweden.
Frida HålleniusFood Technology, Engineering and Nutrition, Lund University, PO Box 124, 221 00, Lund, Sweden.
Anne NilssonFood Technology, Engineering and Nutrition, Lund University, PO Box 124, 221 00, Lund, Sweden.
Lund University · SE

Funding

Direktör Albert Påhlssons Stiftelse FB2018-0297Kungliga Fysiografiska Sällskapet i Lund 39893VINNOVA 2017-03575
6 · The paper itself

Abstract

backgroundSince its discovery in 2007, the importance of the human gut bacterium Prevotella copri (P. copri) has been widely recognized with its links to diet and health status and potential as next generation probiotic. Therefore, precise, convenient and cost-effective diagnostic tools for the detection and quantification of P. copri from clinical and environmental samples are needed.

resultsIn this study, a Sybr Green qPCR protocol for P. copri detection and quantification was developed and tested on P. copri-spiked murine faeces samples targeting both the 16S rRNA gene and P. copri genome specific genes. The use of one 16S rRNA primer pair and 2 genome specific primer pairs resulted in at least 10x higher specificity and sensitivity than the primer-only PCR currently cited in the literature, reaching a sensitivity of 10

conclusionsThis improved qPCR-based method will allow accurate P. copri identification and quantification. Moreover, this methodology can also be applied to identify other bacterial species in complex samples.

Indexed as

AdultAnimalsBenzothiazolesDiaminesDNA, BacterialDNA PrimersFecesFemaleHigh-Throughput Nucleotide SequencingHumansMaleMicePhylogenyPrevotellaQuinolinesReal-Time Polymerase Chain ReactionBenzothiazolesDiaminesDNA, BacterialDNA PrimersQuinolinesRNA, Ribosomal, 16SSYBR Green IPrevotella copriqPCRSYBR green

Identifiers

PMID33430782
PMCPMC7798335
OpenAlexW3120866281

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.