Evidence map›Paper›PMID 33428622›Full record

ArticlePloS one2021

Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata).

Francesco Maroso, Konstantinos Gkagkavouzis, Sabina De Innocentiis, Jasmien Hillen, Fernanda do Prado, Nikoleta Karaiskou, John Bernard Taggart, Adrian Carr, Einar Nielsen, Alexandros Triantafyllidis and 2 more

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Assessment of the Genetic Diversity of the Monogenean Gill ParasiteAnimals : an open access journal from MDPI · 2024
    Article
  6. Population Genomics of the Blue Shark,Evolutionary applications · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Francesco MarosoDepartment of Comparative Biomedicine and Food Science, University of Padua, Legnaro (PD), Italy.ORCID 0000-0003-3524-5916
Konstantinos GkagkavouzisDepartment of Genetics, Development and Molecular Biology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Macedonia, Greece.ORCID 0000-0001-6967-1361
Sabina De InnocentiisISPRA, Institute for Environmental Protection and Research, Roma, Italy.
Jasmien HillenLaboratory of Biodiversity and Evolutionary Genomics, University of Leuven, Leuven, Belgium.
Fernanda do PradoDepartment of Biological Sciences, São Paulo State University, Bauru, Brazil.
Nikoleta KaraiskouDepartment of Genetics, Development and Molecular Biology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Macedonia, Greece.
John Bernard TaggartInstitute of Aquaculture, University of Stirling, Stirling, United Kingdom.
Adrian CarrFios Genomics Ltd, Edinburgh, United Kingdom.
Einar NielsenSection for Population Ecology and Genetics, National Institute of Aquatic Resources, Technical University of Denmark, Silkeborg, Denmark.
Alexandros TriantafyllidisDepartment of Genetics, Development and Molecular Biology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Macedonia, Greece.
Luca BargelloniDepartment of Comparative Biomedicine and Food Science, University of Padua, Legnaro (PD), Italy.
Aquatrace Consortium

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gilthead sea bream is an important target for both recreational and commercial fishing in Europe, where it is also one of the most important cultured fish. Its distribution ranges from the Mediterranean to the African and European coasts of the North-East Atlantic. Until now, the population genetic structure of this species in the wild has largely been studied using microsatellite DNA markers, with minimal genetic differentiation being detected. In this geographically widespread study, 958 wild gilthead sea bream from 23 locations within the Mediterranean Sea and Atlantic Ocean were genotyped at 1159 genome-wide SNP markers by RAD sequencing. Outlier analyses identified 18 loci potentially under selection. Neutral marker analyses identified weak subdivision into three genetic clusters: Atlantic, West, and East Mediterranean. The latter group could be further subdivided into an Ionian/Adriatic and an Aegean group using the outlier markers alone. Seascape analysis suggested that this differentiation was mainly due to difference in salinity, this being also supported by preliminary genomic functional analysis. These results are of fundamental importance for the development of proper management of this species in the wild and are a first step toward the study of the potential genetic impact of the sea bream aquaculture industry.

Indexed as

AnimalsAtlantic OceanEuropeGenetic MarkersGenetics, PopulationGenome-Wide Association StudyMediterranean SeaMicrosatellite RepeatsPolymorphism, Single NucleotideSea BreamGenetic Markers

Identifiers

PMID33428622
PMCPMC7799848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.