Evidence map›Paper›PMID 33427965›Full record

ArticleArchives of virology2021

Full genome sequence of a new three-segment gammapartitivirus from the phytopathogenic fungus Alternaria tenuissima on cotton in China.

Zhijian Liang, Xiangyu Wang, Huihui Hua, Wen Cao, Tao Zhou, Can Zhao, Xuehong Wu

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhijian LiangCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Xiangyu WangCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Huihui HuaCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Wen CaoCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Tao ZhouCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China.
Can ZhaoCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China. cancanzhao1990@qq.com.
Xuehong WuCollege of Plant Protection, China Agricultural University, Haidian District, Beijing, 100193, People's Republic of China. wuxuehong@cau.edu.cn.ORCID http://orcid.org/0000-0003-2669-2300
China Agricultural University · CNInstitute of Plant Protection · CN

Funding

Chinese Universities Scientific Fund 2017TC001
6 · The paper itself

Abstract

In this study, a new double-stranded RNA (dsRNA) virus, Alternaria tenuissima partitivirus 1 (AttPV1), was isolated from Alternaria tenuissima strain XJ-BZ-2-6, a phytopathogenic fungus infecting cotton in China. The genome of AttPV1 comprised three dsRNAs of 1,785 nt (dsRNA1), 1,545 nt (dsRNA2), and 1,537 nt (dsRNA3) in length, the nucleotide sequence of which was determined using reverse transcription polymerase chain reaction, random-primed clones, and RNA-ligase-mediated rapid amplification of cDNA ends. dsRNA1 had a single open reading frame encoding a putative 61.54-kDa RNA-dependent RNA polymerase (RdRp). dsRNA2 and dsRNA3 were predicted to encode putative coat proteins (CPs) of 47.90 kDa and 46.25 kDa, respectively. The RdRp domain shared 63.54-73.17% amino acid sequence identity with members of the genus Gammapartitivirus. Phylogenetic trees based on RdRp or CP sequences showed that AttPV1 clustered with members of the genus Gammapartitivirus. Hence, these results indicate that AttPV1 is a new gammapartitivirus from A. tenuissima.

Indexed as

AlternariaAmino Acid SequenceBase SequenceCapsid ProteinsChinaFungal VirusesGenome, ViralGossypiumOpen Reading FramesPlant DiseasesRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralRNA VirusesSequence AlignmentViral ProteinsCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralViral Proteins

Identifiers

PMID33427965
OpenAlexW3119067258

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.