Evidence map›Paper›PMID 33427029›Full record

ArticleRNA biology2021

Characterization of synthetic riboswitch in cell-free protein expression systems.

Yaroslav Chushak, Svetlana Harbaugh, Kathryn Zimlich, Bryan Alfred, Jorge Chávez, Nancy Kelley-Loughnane

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Riboswitches, from cognition to transformation.Synthetic and systems biotechnology · 2023
    Review
  5. Article
  6. Solid-Phase Cell-Free Protein Synthesis and Its Applications in Biotechnology.Advances in biochemical engineering/biotechnology · 2023
    Article
  7. Advancing synthetic biology through cell-free protein synthesis.Computational and structural biotechnology journal · 2023
    Review
  8. Article
  9. Cell-free riboswitches.RSC chemical biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yaroslav ChushakAir Force Research Laboratory, Henry M Jackson Foundation, Dayton, USA.ORCID 0000-0002-3225-8140
Svetlana Harbaugh711 Human Performance Wing, Air Force Research Laboratory, Dayton, OH, USA.
Kathryn ZimlichAir Force Research Laboratory, Henry M Jackson Foundation, Dayton, USA.
Bryan Alfred711 Human Performance Wing, Air Force Research Laboratory, Dayton, OH, USA.
Jorge Chávez711 Human Performance Wing, Air Force Research Laboratory, Dayton, OH, USA.ORCID 0000-0002-0771-6947
Nancy Kelley-LoughnaneMaterials and Manufacturing Directorate, Air Force Research Laboratory, Dayton, OH, USA.ORCID 0000-0003-2974-644X
United States Air Force Research Laboratory · USHenry M. Jackson Foundation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Riboswitches are RNA-based regulatory elements that utilize ligand-induced structural changes in the 5'-untranslated region of mRNA to regulate the expression of associated genes. The majority of synthetic riboswitches have been selected and tested in cell-based systems. Cell-free protein expression systems (CFPS) have several advantages for the development and testing of synthetic riboswitches, including eliminating interactions with complex cellular networks, and the decoupling of transcription and translation processes. To gain a better understanding of the riboswitch regulatory mechanism, to allow for more efficient riboswitch optimization and use for biosensing applications, we studied the performance of a theophylline-responsive synthetic riboswitch coupled with the superfolder green fluorescent protein (sfGFP) reporter gene in

Indexed as

Aptamers, NucleotideCell EngineeringCell-Free SystemEscherichia coliGene Expression Regulation, BacterialGreen Fluorescent ProteinsRiboswitchSynthetic BiologyTheophyllineAptamers, NucleotideGreen Fluorescent ProteinsRiboswitchTheophyllinecell-free protein expression systemsdose responsekinetic modellingRiboswitchriboswitch activation

Identifiers

PMID33427029
PMCPMC8583236
OpenAlexW3118268864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.