Evidence map›Paper›PMID 33426509›Full record

ArticleiScience2021

A multi-pronged approach targeting SARS-CoV-2 proteins using ultra-large virtual screening.

Christoph Gorgulla, Krishna M Padmanabha Das, Kendra E Leigh, Marco Cespugli, Patrick D Fischer, Zi-Fu Wang, Guilhem Tesseyre, Shreya Pandita, Alec Shnapir, Anthony Calderaio and 27 more

Abstract read
In one paragraph

Article in iScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Article
  2. Article
  3. A Database for Large-Scale Docking and Experimental Results.Journal of chemical information and modeling · 2025
    Article
  4. Article
  5. Review
  6. Identifying Artifacts from Large Library Docking.Journal of medicinal chemistry · 2024
    Article
  7. Identifying Artifacts from Large Library Docking.bioRxiv : the preprint server for biology · 2024
    Article
  8. The impact of Library Size and Scale of Testing on Virtual Screening.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. DockOpt: A Tool for Automatic Optimization of Docking Models.Journal of chemical information and modeling · 2024
    Article
  12. Acta pharmaceutica Sinica. B · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Large-Scale Docking in the Cloud.Journal of chemical information and modeling · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

37 authors.

Christoph GorgullaDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Krishna M Padmanabha DasDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Kendra E LeighMax Planck Institute of Biophysics, Frankfurt am Main, Hessen 60438, Germany.
Marco CespugliInnophore GmbH, Graz 8010, Austria.
Patrick D FischerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Zi-Fu WangDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Guilhem TesseyreGoogle, Mountain View, CA 94043, USA.
Shreya PanditaGoogle, Mountain View, CA 94043, USA.
Alec ShnapirGoogle, Mountain View, CA 94043, USA.
Anthony CalderaioVirtualFlow Organization, https://virtual-flow.org/, Boston, MA 02115, USA.
Minko GechevGoogle, Mountain View, CA 94043, USA.
Alexander RoseMol∗ Consortium, https://molstar.org, San Diego, CA 92109, USA.
Noam LewisGoogle, Mountain View, CA 94043, USA.
Colin HutchesonGoogle, Mountain View, CA 94043, USA.
Erez YaffeGoogle, Mountain View, CA 94043, USA.
Roni LuxenburgGoogle, Mountain View, CA 94043, USA.
Henry D HerceDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Vedat DurmazInnophore GmbH, Graz 8010, Austria.
Thanos D HalazonetisDepartment of Molecular Biology, University of Geneva, Geneva 1205, Switzerland.
Konstantin FackeldeyZuse Institute Berlin (ZIB), Berlin 14195, Germany.
J J PattenDepartment of Microbiology, Boston University Medical School, Boston University, Boston, MA 02118, USA.
Alexander ChuprinaEnamine, Kyiv 02094, Ukraine.
Igor DziubaUkrOrgSyntez Ltd., Kyiv 01133, Ukraine.
Alla PlekhovaChemspace, Kyiv 02094, Ukraine.
Yurii MorozChemspace, Kyiv 02094, Ukraine.
Dmytro RadchenkoEnamine, Kyiv 02094, Ukraine.
Olga TarkhanovaChemspace, Kyiv 02094, Ukraine.
Irina YavnyukEnamine, Kyiv 02094, Ukraine.
Christian GruberInnophore GmbH, Graz 8010, Austria.
Ryan YustGoogle, Mountain View, CA 94043, USA.
Dave PayneGoogle, Mountain View, CA 94043, USA.
Anders M NäärDepartment of Nutritional Sciences & Toxicology, University of California Berkeley, Berkeley, CA 94720, USA.
Mark N NamchukDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Robert A DaveyDepartment of Microbiology, Boston University Medical School, Boston University, Boston, MA 02118, USA.
Gerhard WagnerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.
Jamie KinneyGoogle, Mountain View, CA 94043, USA.
Haribabu ArthanariDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Harvard University, Boston, MA 02115, USA.

Funding

Virology BSL4 CoreP01AI120943 · NIAID · WASHINGTON UNIVERSITY · PI Gaya K. Amarasinghe · 2016 to 2026
$30.2M
Antiviral Lead Identification to Treat Filovirus InfectionsR01AI128364 · NIAID · PURDUE UNIVERSITY · PI DAVEY, ROBERT A, DAVISSON, VINCENT JO · 2019 to 2022
$2.6M
NMR Fingerprinting: Leveraging optimal control pulse design, tailored isotope labeling, and machine learning to study intractable proteinsR01GM136859 · NIGMS · DANA-FARBER CANCER INST · PI ARTHANARI, HARIBABU · 2020 to 2024
$2.4M
Roles of Eukaryotic Translation Initiation Factors in Gene ExpressionR01CA200913 · NCI · HARVARD MEDICAL SCHOOL · PI WAGNER, GERHARD · 2016 to 2020
$2.3M
NIAID NIH HHS P01 AI120943NIAID NIH HHS R01 AI128364NIGMS NIH HHS R01 GM136859
6 · The paper itself

Abstract

The unparalleled global effort to combat the continuing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic over the last year has resulted in promising prophylactic measures. However, a need still exists for cheap, effective therapeutics, and targeting multiple points in the viral life cycle could help tackle the current, as well as future, coronaviruses. Here, we leverage our recently developed, ultra-large-scale

Indexed as

DrugsHigh-Performance Computing in BioinformaticsStructural BiologyVirology

Identifiers

PMID33426509
PMCPMC7783459

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.