Evidence map›Paper›PMID 33425904›Full record

ArticleFrontiers in cell and developmental biology2020

Deform-nu: A DNA Deformation Energy-Based Predictor for Nucleosome Positioning.

Guoqing Liu, Hongyu Zhao, Hu Meng, Yongqiang Xing, Hui Yang, Hao Lin

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in cell and developmental biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Guoqing LiuSchool of Life Sciences and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Hongyu ZhaoSchool of Life Sciences and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Hu MengSchool of Life Sciences and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Yongqiang XingSchool of Life Sciences and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Hui YangSchool of Life Sciences and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Hao LinCenter for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.
Inner Mongolia University of Science and Technology · CNUniversity of Electronic Science and Technology of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure and function of chromatin can be regulated through positioning patterns of nucleosomes. DNA-based processes are regulated via nucleosomes. Therefore, it is significant to determine nucleosome positions in DNA-based processes. A deformation energy model was proposed to predict nucleosome positions in our previous study. A free web server based on the model (http://lin-group.cn/server/deform-nu/) was firstly established to estimate the occupancy and rotational positioning of nucleosomes in the study. Then, the performance of the model was verified by several examples. The results indicated that nucleosome positioning relied on the physical properties of DNA, such as deformation energy.

Indexed as

deformation energynucleosome occupancypredictionrotational positioningweb server

Identifiers

PMID33425904
PMCPMC7785812
OpenAlexW3118169840

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.