Evidence map›Paper›PMID 33423172›Full record

ArticleBiomolecular NMR assignments2021

Angelo Gallo, Aikaterini C Tsika, Nikolaos K Fourkiotis, Francesca Cantini, Lucia Banci, Sridhar Sreeramulu, Harald Schwalbe, Georgios A Spyroulias

Open access · bronzeAbstract read
In one paragraph

Article in Biomolecular NMR assignments, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Angelo Gallo *Department of Pharmacy, University of Patras, 26504, Patras, Greece.
Aikaterini C Tsika *Department of Pharmacy, University of Patras, 26504, Patras, Greece.
Nikolaos K Fourkiotis *Department of Pharmacy, University of Patras, 26504, Patras, Greece.
Francesca CantiniMagnetic Resonance Center - CERM, University of Florence, Via Luigi Sacconi 6, Sesto Fiorentino, 50019, Florence, Italy.
Lucia BanciMagnetic Resonance Center - CERM, University of Florence, Via Luigi Sacconi 6, Sesto Fiorentino, 50019, Florence, Italy. banci@cerm.unifi.it.
Sridhar SreeramuluInstitute for Organic Chemistry and Chemical Biology, Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 7, 60438, Frankfurt, Germany.
Harald SchwalbeInstitute for Organic Chemistry and Chemical Biology, Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 7, 60438, Frankfurt, Germany. Schwalbe@nmr.uni-frankfurt.de.
Georgios A SpyrouliasDepartment of Pharmacy, University of Patras, 26504, Patras, Greece. G.A.Spyroulias@upatras.gr.ORCID http://orcid.org/0000-0003-1799-3312
University of Patras · GRGoethe University Frankfurt · DEInteruniversity Consortium for Magnetic Resonance · IT

Funding

DFG "Molecular Principles of RNA-based regulation." CRC902EU FP7 REGPOT CT-2011-285950 - "SEE-DRUG" 285950GSRT & EU - NSRF 2014-2020 MIS-5002550
6 · The paper itself

Abstract

SARS-CoV-2 RNA, nsP3c (non-structural Protein3c) spans the sequence of the so-called SARS Unique Domains (SUDs), first observed in SARS-CoV. Although the function of this viral protein is not fully elucidated, it is believed that it is crucial for the formation of the replication/transcription viral complex (RTC) and of the interaction of various viral "components" with the host cell; thus, it is essential for the entire viral life cycle. The first two SUDs, the so-called SUD-N (the N-terminal domain) and SUD-M (domain following SUD-N) domains, exhibit topological and conformational features that resemble the nsP3b macro (or "X") domain. Indeed, they are all folded in a three-layer α/β/α sandwich structure, as revealed through crystallographic structural investigation of SARS-CoV SUDs, and they have been attributed to different substrate selectivity as they selectively bind to oligonucleotides. On the other hand, the C-terminal SUD (SUD-C) exhibit much lower sequence similarities compared to the SUD-N & SUD-M, as reported in previous crystallographic and NMR studies of SARS-CoV. In the absence of the 3D structures of SARS-CoV-2, we report herein the almost complete NMR backbone and side-chain resonance assignment (

Indexed as

Magnetic Resonance SpectroscopyCarbon IsotopesCoronavirus Papain-Like ProteasesHydrogenNitrogen IsotopesProtein BindingProtein DomainsProtein Structure, SecondarySARS-CoV-2Carbon-13Carbon IsotopesCoronavirus Papain-Like ProteasesHydrogenNitrogen-15Nitrogen Isotopespapain-like protease, SARS-CoV-2Covid19-NMRNon-structural proteinProtein druggabilitySARS-CoV-2SARS unique domain (SUD)Solution NMR-spectroscopy

Identifiers

PMID33423172
PMCPMC7796810
OpenAlexW3120410412

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.