Evidence map›Paper›PMID 33423075›Full record

ArticlePlant cell reports2021

Identification and analysis of a differentially expressed wheat RING-type E3 ligase in spike primordia development during post-vernalization.

Jae Ho Kim, Irfan Ullah Khan, Cheol Won Lee, Dae Yeon Kim, Cheol Seong Jang, Sung Don Lim, Yong Chan Park, Ju Hee Kim, Yong Weon Seo

Abstract read
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In one paragraph

Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 12 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jae Ho KimDepartment of Plant Biotechnology, Korea University, Seongbuk-Gu, Seoul, 02841, Republic of Korea.
Irfan Ullah KhanDepartment of Plant Biotechnology, Korea University, Seongbuk-Gu, Seoul, 02841, Republic of Korea.
Cheol Won LeeDepartment of Plant Biotechnology, Korea University, Seongbuk-Gu, Seoul, 02841, Republic of Korea.
Dae Yeon KimDepartment of Plant Biotechnology, Korea University, Seongbuk-Gu, Seoul, 02841, Republic of Korea.
Cheol Seong JangPlant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon, 200-713, Republic of Korea.
Sung Don LimPlant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon, 200-713, Republic of Korea.
Yong Chan ParkPlant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon, 200-713, Republic of Korea.
Ju Hee KimPlant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon, 200-713, Republic of Korea.
Yong Weon SeoDepartment of Plant Biotechnology, Korea University, Seongbuk-Gu, Seoul, 02841, Republic of Korea. seoag@korea.ac.kr.ORCID http://orcid.org/0000-0002-6702-2912
Kangwon National University · KRKorea University · KR

Funding

Ministry of Science, ICT and Future Planning 2017R1D1A1B06030349
6 · The paper itself

Abstract

key messageWe identified a RING-type E3 ligase (TaBAH1) protein in winter wheat that targets TaSAHH1 for degradation and might be involved in primordia development by regulating targeted protein degradation. Grain yield per spike in wheat (Triticum aestivum), is mainly determined prior to flowering during mature primordia development; however, the genes involved in primordia development have yet to be characterized. In this study, we demonstrated that, after vernalization for 50 days at 4 °C, there was a rapid acceleration in primordia development to the mature stages in the winter wheat cultivars Keumgang and Yeongkwang compared with the Chinese Spring cultivar. Although Yeongkwang flowers later than Keumgang under normal condition, it has the same heading time and reaches the WS9 stage of floral development after vernalization for 50 days. Using RNA sequencing, we identified candidate genes associated with primordia development in cvs. Keumgang and Yeongkwang, that are differentially expressed during wheat reproductive stages. Among these, the RING-type E3 ligase TaBAH1 (TraesCS5B01G373000) was transcriptionally upregulated between the double-ridge (WS2.5) stage and later stages of floret primordia development (WS10) after vernalization. Transient expression analysis indicated that TaBAH1 was localized to the plasma membrane and nucleus and was characterized by self-ubiquitination activity. Furthermore, we found that TaBAH1 interacts with TaSAHH1 to mediate its polyubiquitination and degradation through a 26S proteasomal pathway. Collectively, the findings of this study indicate that TaBAH1 might play a prominent role in post-vernalization floret primordia development.

Indexed as

FlowersGene Expression Regulation, PlantPhylogenyPlant ProteinsProteasome Endopeptidase ComplexTime FactorsTriticumUbiquitinationUbiquitin-Protein LigasesPlant ProteinsProteasome Endopeptidase ComplexUbiquitin-Protein LigasesPrimordia developmentRING-type E3 ligaseVernalizationWaddington scaleWheat (triticum aestivum)

Identifiers

PMID33423075
OpenAlexW3120449444

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.