Evidence map›Paper›PMID 33420982›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Lab-on-a-Filter Techniques for Economical, Effective, and Flexible Proteome Analysis.

Yi-Han Lin, Rodrigo Vargas Eguez, Isha Vashee, Yanbao Yu

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Quenching Trypsin Is Unnecessary in Filter-Based Bottom-Up Proteomics.Journal of the American Society for Mass Spectrometry · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yi-Han LinJ. Craig Venter Institute, Rockville, MD, USA.
Rodrigo Vargas EguezJ. Craig Venter Institute, Rockville, MD, USA.
Isha VasheeJ. Craig Venter Institute, Rockville, MD, USA.
Yanbao YuJ. Craig Venter Institute, Rockville, MD, USA. yayu@jcvi.org.
J. Craig Venter Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Effective and reliable protease digestion of biological samples is critical to the success in bottom-up proteomics analysis. Various filter-based approaches using different types of membranes have been developed in the past several years and largely implemented in sample preparations for modern proteomics. However, these approaches rely heavily on commercial filter products, which are not only costly but also limited in membrane options. Here, we present a plug-and-play device for filter assembly and protease digestion. The device can accommodate a variety of membrane types, can be packed in-house with minimal difficulty, and is extremely cost-effective and reliable. Our protocol offers a versatile platform for general proteome analyses and clinical mass spectrometry.

Indexed as

Membranes, ArtificialPolyvinylsProteomicsTandem Mass SpectrometryAnalytic Sample Preparation MethodsFiltrationFluorocarbon PolymersProteinsProteolysisProteomeFluorocarbon PolymersMembranes, Artificialpolyvinylidene fluoridePolyvinylsProteinsProteomeFilter-aided sample preparation (FASP)Glass fiberMembranePolyethersulfone (PES)Polyvinylidene fluoride (PVDF)SalivaShotgun proteomicsSuspension trapping (STrap)TissueUrine

Identifiers

PMID33420982
OpenAlexW3119306917

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.